Open h21ak9 opened 1 year ago
@h21ak9
This is the repo just for Kilosort 1 . This is the repo for 2+ https://github.com/MouseLand/Kilosort
That being said they removed the use of kcoords after Kilosort 1. There is an issue where they discussed it at the other repo, but I can remember which one off the top of my head. So you likely want to search there.
I'm trying to make sense of how kcoords works and saw the following lines in configFiles/createChannelMapFile.m:
But I cannot see any instance of ops.criterionNoiseChannel actually being used in the code (I ran grep on the entire project, the above mention is the only occurrence). Elsewhere, I have seen claims that the default value for this parameter is 0.2, but those claims were made in 2018 which, as I understand it, is well before KS3 came on to the scene. So my first question is -- is the default value for this parameter still set to 0.2, and if so, where?
My second question is -- if I use a multi-shank probe, is the correct approach to just group the pixels on each shank into a different group using kcoords? Is there anything else I need to do to signify that they reside on different shanks?