Closed delrosni closed 6 years ago
Hi,
Given your tau (0.5 seconds) and frame rate (3.7Hz), you should expect transients to decay in ~2 frames, which is much faster than the apparent decay. Your transients seem to last for ~20-30 frames. Either your timescale is not really 2 frames, or you have bursts of sustained activity, in which case the result is correct.
Did changing the timescale help? Please reopen this issue if you're still having problems with this, thanks
Hi Marius,
After running wrapperDECONV on my processed somatic traces, I get results that look similar to my original raw trace:
I have added OASIS to the path and ran the OASIS setup script. I specified my sensor tau (0.5) and frames per second (3.7) in the ops structure. Interestingly, when I run OASIS's deconvolveCa wrapper with just the method specified as 'constrained_foopsi', I get spikes that look more reasonable.
Not relevant but for a spatial reference, the trace I'm showing is from the selected cell: