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cortex-lab / Suite2P

Tools for processing 2P recordings
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where are manually curated ROIs saved? #142

Closed marinafridman closed 6 years ago

marinafridman commented 6 years ago

Hi!

I wanted to make sure I am selecting the correct, manually curated cells after running the GUI. I've been using the labels in dat.stat.iscell, based on what I read in the readme, but I get some cells where the Fcell is zero at times, which is strange... Now I found a note at the end of the master file example script that says

% manual, GUI overwritten "iscell" labels are in dat.cl.iscell

However I do not see an iscell field in the dat.cl structure.

What should I be using for the iscell label after manual curation? Many thanks! ~Marina

carsen-stringer commented 6 years ago

Sorry Marina, that note is incorrect. You are right that the manual labels will be saved in "stat(i).iscell" where i is the index of the cell. You can make it into an array by saying 

iscell = [stat.iscell]

Also, make sure you are loading the F*_proc.mat files - this is where the manual labels are saved after clicking (although I think you already are if you see a "cl" field).