add hard and soft categorization labels to each ROI

cortex-lab / Suite2P

Tools for processing 2P recordings

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add hard and soft categorization labels to each ROI #21

Closed marius10p closed 7 years ago

marius10p commented 8 years ago

Currently only "soft" labels are provided: could this be an ROI at all? Then we load the soft-labelled ROIs into the GUI and play with the ROI criteria on a dataset by dataset basis.

We should also have a "hard" label: if you pushed the algorithm to give you its best guess, which ROIs would be classified as cells? @syncrostone, this will be the label that should be used for the neurofinder challenge.

marius10p commented 7 years ago

The classification schema for cell labeling has evolved a lot. Any ROI detected now has an implicit potential for being a source. ROIs with stat(k).iscell = 1 validate some anatomical measures (number of pixels and compactness). In near future update, Suite2p will learn from users choices in the GUI and further improve this classification scheme.