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cortex-lab / Suite2P

Tools for processing 2P recordings
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separating spike times/amps when you have processed 2+ recordings together #62

Closed geffenlab closed 7 years ago

geffenlab commented 7 years ago

Hi I have processed two recordings together through suite2P and the calcium traces are easily separated into the two blocks (i.e. FCell has two cells, one for each block). Is there a way you could implement this for the spike times and amplitudes?
As it is now, do the spike times correspond to the two blocks concatenated? (e.g. if I have two blocks of 100 images, spike times of 5 and 105 would correspond to frame 5 of the two blocks?) Thanks, Kath

marius10p commented 7 years ago

Hi Kath, I have added that recently, but don't update yet because I think the old spike deconvolution is now broken. Sometime mid next week I will make a change that will fix and update the deconvolution method; we have some new results there. Cheers, -Marius

marius10p commented 7 years ago

Spike deconvolution is fixed, and the output is in a cell for each block of the experiment. Let me know if there are any more problems.