m-beau
commented
3 years ago And very worryingly, it leads to error due to ungraceful closing:
11:07:49.984 [D] init:68 Start capturing exceptions.
11:07:52.339 [W] model:545 Unreferenced clusters found in templates (generally not a problem)
11:07:52.341 [D] model:560 Loading spike clusters.
11:07:54.014 [W] model:567 Unreferenced clusters found in spike_clusters (generally not a problem)
11:07:54.017 [D] model:507 No channel shank file found.
11:07:54.018 [D] model:627 Loading templates.
11:07:54.019 [D] model:654 Templates are dense.
11:07:54.019 [D] model:604 Loading spike waveforms.
11:07:54.019 [D] model:609 Skipping spike waveforms that do not exist, they will be extracted on the fly from the raw data as needed.
11:07:54.019 [D] model:660 Loading the whitening matrix.
11:07:54.020 [D] model:667 Loading the inverse of the whitening matrix.
11:07:54.023 [D] model:164 Loading traces at /mnt/6C2E-653C/transitory_spikesorting/20-08-07_MB059/20-08-07_MB059_probe2/20-08-07_MB059_probe2.ap.bin.
11:07:54.023 [D] model:696 Loading features.
11:07:54.024 [D] model:711 Features are sparse.
11:07:54.025 [D] model:733 Loading template features.
11:07:54.026 [D] model:743 Template features are sparse.
11:07:54.027 [D] model:442 Load cluster_celltype.tsv.
11:07:54.028 [D] _misc:319 Read /mnt/6C2E-653C/transitory_spikesorting/20-08-07_MB059/20-08-07_MB059_probe2/cluster_celltype.tsv.
11:07:54.028 [D] model:442 Load cluster_group.tsv.
11:07:54.030 [D] _misc:319 Read /mnt/6C2E-653C/transitory_spikesorting/20-08-07_MB059/20-08-07_MB059_probe2/cluster_group.tsv.
11:07:54.046 [D] context:100 Initialize joblib cache dir at /mnt/6C2E-653C/transitory_spikesorting/20-08-07_MB059/20-08-07_MB059_probe2/.phy.
11:07:54.046 [D] context:101 Reducing the size of the cache if needed.
11:07:54.507 [D] base:102 Add filter high_pass.
11:07:54.507 [D] config:31 Load config file /home/maxime/.phy/phy_config.py.
11:07:54.508 [D] plugin:74 Scanning /home/maxime/.phy/plugins.
11:07:54.508 [D] plugin:78 Found plugin module n_spikes_view.py.
11:07:54.509 [D] plugin:36 Register plugin n_spikes_view.ExampleNspikesViewsPlugin.
11:07:54.509 [D] plugin:145 Loading 1 plugins.
11:07:54.509 [D] plugin:156 Attached plugin ExampleNspikesViewsPlugin.
11:07:54.510 [D] context:126 Load memcache for phy.apps.base._get_template_waveforms.
11:07:54.510 [D] context:126 Load memcache for phy.apps.base.get_mean_spike_template_amplitudes.
11:07:54.511 [D] context:126 Load memcache for phy.apps.base.get_template_counts.
11:07:54.512 [D] context:126 Load memcache for phy.apps.base.get_template_for_cluster.
11:07:54.514 [D] context:126 Load memcache for phy.apps.template.gui.get_template_amplitude.
11:07:54.515 [D] context:126 Load memcache for phy.apps.base.get_cluster_amplitude.
11:07:54.515 [D] context:126 Load memcache for phy.apps.base.get_mean_firing_rate.
11:07:54.516 [D] context:126 Load memcache for phy.apps.base.get_best_channel.
11:07:54.519 [D] context:126 Load memcache for phy.apps.template.gui.get_best_channels.
11:07:54.520 [D] context:126 Load memcache for phy.apps.base.get_channel_shank.
11:07:54.521 [D] context:126 Load memcache for phy.apps.base.get_probe_depth.
11:07:54.521 [D] context:126 Load memcache for phy.apps.base.peak_channel_similarity.
11:07:54.676 [E] init:62 An error has occurred (ValueError): EOF: reading array data, expected 262144 bytes got 259907
Traceback (most recent call last):
File "/home/maxime/anaconda3/envs/phy2/bin/phy", line 8, in
Phy simply freezes when trying to quit it, forcing me to force-kill the process to exit the app.
Steps to reproduce the problem: either hit ctrl+q or click on the quit cross or file->quit