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cortex-lab / phy

phy: interactive visualization and manual spike sorting of large-scale ephys data
BSD 3-Clause "New" or "Revised" License
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Phy won't open TemplateFeatureView #1145

Closed diogoflduarte closed 2 years ago

diogoflduarte commented 2 years ago

Hi everyone,

I'm getting the following error: 16:45:46.127 [W] gui:671 Could not create view TemplateFeatureView. whenever I try to open the TemplateFeatureView on a fresh install of Phy under windows, working on a dataset sorted with Kilosort3.

Here's what I tried:

adding the --debug tag did not output any message related to this.

adding --clear-cache and --clear-state did not make a difference, so I'm convinced it's not a corrupted configuration.

Without the TemplateFeatureView, merging and splitting operations are compromised... anyone else having this issue, or even better, a fix?

EDIT: same applies to FeatureView

diogoflduarte commented 2 years ago

UPDATE 1: phy dev has the same behavior on KS3 datasets.

UPDATE 2: I re-sorted the same dataset using Kilosort2.5 and I now have the TemplateFeatureView, and better even, the FeatureView.

Any guess on what causes this?

GrimmSnark commented 2 years ago

Hello,

I think TemplateFeature view has been phased out of kilosort3.

Feature view can be reenabled by separately running

phy extract-waveforms params.py

through your phy python command line.

Good luck,

Michael

diogoflduarte commented 2 years ago

Tested and confirmed this works!

Thank you!!