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cortex-lab / phy

phy: interactive visualization and manual spike sorting of large-scale ephys data
BSD 3-Clause "New" or "Revised" License
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cluster view and similarity view not shown #1151

Closed sbyoo closed 1 year ago

sbyoo commented 2 years ago

Hello

I am trying to use phy in the Mac mini with Big Sur as OS. I installed identical dependencies to the current Mac in another Mac, in which phy runs perfectly. However, in this Mac, all other function works except the cluster view and similarity view (screenshot attached). Your help will be greatly appreciated. Thank you.

Best, phy_issue

Mousakr commented 2 years ago

Hi,

I unfortunately have the same issue. I use fedora linux version 35, with a newly installed python environment (same issue arises for python 3.7 , 3.8 and 3.10) and newly installed phy. When I attempt to close the GUI, I get the following error (I am unsure if it is related...):

17:53:42.598 [E] qt:178 Timeout in _block().

kissadamfkut commented 2 years ago

Same issue here. It's been happening since the last OS upgrade (Manjaro). The following packages have been upgraded when it turned broken:

packages.txt

a-zmz commented 2 years ago

same issue! running on os fedora 36, kernel 5.17.8. And i cannot seem to select unit on scatter view either.

brandonStell commented 2 years ago

This response https://github.com/cortex-lab/phy/issues/1143#issuecomment-1072420729 solved the problem for me on Ubuntu 22.04.