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cortex-lab / phy

phy: interactive visualization and manual spike sorting of large-scale ephys data
BSD 3-Clause "New" or "Revised" License
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PyQt5 Error #1223

Closed nmtimme closed 8 months ago

nmtimme commented 8 months ago

Hello

I previously installed phy2 in a conda environment and used it successfully up until a day or two ago. Then, today, I attempted to use it and I get this error:

(phy2) lapishla@login1:/N/project/lapishLabWorkspace/SpikeInterfaceSpikeSorting/NeuropixelProbeSpikeSortingResults/2023-09-26_12-26-58/sorter_output> phy template-gui params.py
Traceback (most recent call last):
  File "/N/u/lapishla/BigRed200/.conda/envs/phy2/bin/phy", line 5, in <module>
    from phy.apps import phycli
  File "/N/u/lapishla/BigRed200/.conda/envs/phy2/lib/python3.10/site-packages/phy/apps/__init__.py", line 22, in <module>
    from phy.gui.qt import QtDialogLogger
  File "/N/u/lapishla/BigRed200/.conda/envs/phy2/lib/python3.10/site-packages/phy/gui/__init__.py", line 6, in <module>
    from .qt import (
  File "/N/u/lapishla/BigRed200/.conda/envs/phy2/lib/python3.10/site-packages/phy/gui/qt.py", line 33, in <module>
    from PyQt5.QtCore import (Qt, QByteArray, QMetaObject, QObject,  # noqa
ImportError: /N/u/lapishla/BigRed200/.conda/envs/phy2/lib/python3.10/site-packages/PyQt5/QtCore.abi3.so: undefined symbol: _ZN23QOperatingSystemVersion11MacOSBigSurE, version Qt_5

I'm not running this on a Mac, so I'm confused by the error. I haven't updated or changed anything in the environment since I last used the software successfully. This is what I have installed in the environment:

# packages in environment at /N/u/lapishla/BigRed200/.conda/envs/phy2:
#
# Name                    Version                   Build  Channel
_libgcc_mutex             0.1                 conda_forge    conda-forge
_openmp_mutex             4.5                       2_gnu    conda-forge
abseil-cpp                20211102.0           h27087fc_1    conda-forge
arrow-cpp                 11.0.0               h374c478_1  
asttokens                 2.2.1              pyhd8ed1ab_0    conda-forge
aws-c-common              0.6.8                h5eee18b_1  
aws-c-event-stream        0.1.6                h6a678d5_6  
aws-checksums             0.1.11               h5eee18b_2  
aws-sdk-cpp               1.8.185              h721c034_1  
backcall                  0.2.0              pyh9f0ad1d_0    conda-forge
backports                 1.0                pyhd8ed1ab_3    conda-forge
backports.functools_lru_cache 1.6.5              pyhd8ed1ab_0    conda-forge
bokeh                     3.2.2              pyhd8ed1ab_0    conda-forge
boost-cpp                 1.73.0              h7f8727e_12  
brotli                    1.0.9                h166bdaf_9    conda-forge
brotli-bin                1.0.9                h166bdaf_9    conda-forge
brotli-python             1.0.9           py310hd8f1fbe_9    conda-forge
bzip2                     1.0.8                h7f98852_4    conda-forge
c-ares                    1.19.1               hd590300_0    conda-forge
ca-certificates           2023.7.22            hbcca054_0    conda-forge
cached-property           1.5.2                hd8ed1ab_1    conda-forge
cached_property           1.5.2              pyha770c72_1    conda-forge
certifi                   2023.7.22          pyhd8ed1ab_0    conda-forge
charset-normalizer        3.2.0              pyhd8ed1ab_0    conda-forge
click                     8.1.7           unix_pyh707e725_0    conda-forge
cloudpickle               2.2.1              pyhd8ed1ab_0    conda-forge
colorama                  0.4.6              pyhd8ed1ab_0    conda-forge
colorcet                  3.0.1                    pypi_0    pypi
comm                      0.1.4              pyhd8ed1ab_0    conda-forge
contourpy                 1.1.0           py310hd41b1e2_0    conda-forge
cycler                    0.11.0             pyhd8ed1ab_0    conda-forge
cython                    3.0.0           py310hc6cd4ac_0    conda-forge
cytoolz                   0.12.2          py310h2372a71_0    conda-forge
dask                      2023.8.0           pyhd8ed1ab_0    conda-forge
dask-core                 2023.8.0           pyhd8ed1ab_0    conda-forge
dbus                      1.13.18              hb2f20db_0  
debugpy                   1.6.8           py310hc6cd4ac_0    conda-forge
decorator                 5.1.1              pyhd8ed1ab_0    conda-forge
distributed               2023.8.0           pyhd8ed1ab_0    conda-forge
exceptiongroup            1.1.3              pyhd8ed1ab_0    conda-forge
executing                 1.2.0              pyhd8ed1ab_0    conda-forge
expat                     2.5.0                hcb278e6_1    conda-forge
fontconfig                2.14.2               h14ed4e7_0    conda-forge
fonttools                 4.42.0          py310h2372a71_0    conda-forge
freetype                  2.12.1               hca18f0e_1    conda-forge
fsspec                    2023.6.0           pyh1a96a4e_0    conda-forge
gettext                   0.21.1               h27087fc_0    conda-forge
gflags                    2.2.2             he1b5a44_1004    conda-forge
ghp-import                2.1.0                    pypi_0    pypi
giflib                    5.2.1                h0b41bf4_3    conda-forge
glib                      2.76.4               hfc55251_0    conda-forge
glib-tools                2.76.4               hfc55251_0    conda-forge
glog                      0.5.0                h48cff8f_0    conda-forge
grpc-cpp                  1.48.2               he1ff14a_1  
gst-plugins-base          1.14.1               h6a678d5_1  
gstreamer                 1.14.1               h5eee18b_1  
h5py                      3.9.0           nompi_py310h367e799_100    conda-forge
hdf5                      1.14.0          nompi_hb72d44e_103    conda-forge
icu                       58.2              hf484d3e_1000    conda-forge
idna                      3.4                pyhd8ed1ab_0    conda-forge
importlib-metadata        6.8.0              pyha770c72_0    conda-forge
importlib_metadata        6.8.0                hd8ed1ab_0    conda-forge
iniconfig                 2.0.0              pyhd8ed1ab_0    conda-forge
ipykernel                 6.25.1             pyh71e2992_0    conda-forge
ipython                   8.14.0             pyh41d4057_0    conda-forge
ipython_genutils          0.2.0                      py_1    conda-forge
jbig                      2.1               h7f98852_2003    conda-forge
jedi                      0.19.0             pyhd8ed1ab_0    conda-forge
jinja2                    3.1.2              pyhd8ed1ab_1    conda-forge
joblib                    1.3.2              pyhd8ed1ab_0    conda-forge
jpeg                      9e                   h0b41bf4_3    conda-forge
jupyter_client            8.3.0              pyhd8ed1ab_0    conda-forge
jupyter_core              5.3.1           py310hff52083_0    conda-forge
keyutils                  1.6.1                h166bdaf_0    conda-forge
kiwisolver                1.4.4           py310hbf28c38_1    conda-forge
krb5                      1.20.1               h81ceb04_0    conda-forge
lcms2                     2.12                 h3be6417_0  
ld_impl_linux-64          2.40                 h41732ed_0    conda-forge
lerc                      3.0                  h295c915_0  
libaec                    1.0.6                hcb278e6_1    conda-forge
libblas                   3.9.0           17_linux64_openblas    conda-forge
libboost                  1.73.0              h28710b8_12  
libbrotlicommon           1.0.9                h166bdaf_9    conda-forge
libbrotlidec              1.0.9                h166bdaf_9    conda-forge
libbrotlienc              1.0.9                h166bdaf_9    conda-forge
libcblas                  3.9.0           17_linux64_openblas    conda-forge
libclang                  10.0.1          default_hb85057a_2  
libcurl                   7.88.1               hdc1c0ab_1    conda-forge
libdeflate                1.8                  h7f8727e_5  
libedit                   3.1.20191231         he28a2e2_2    conda-forge
libev                     4.33                 h516909a_1    conda-forge
libevent                  2.1.12               hf998b51_1    conda-forge
libexpat                  2.5.0                hcb278e6_1    conda-forge
libffi                    3.4.2                h7f98852_5    conda-forge
libgcc-ng                 13.1.0               he5830b7_0    conda-forge
libgfortran-ng            13.1.0               h69a702a_0    conda-forge
libgfortran5              13.1.0               h15d22d2_0    conda-forge
libglib                   2.76.4               hebfc3b9_0    conda-forge
libgomp                   13.1.0               he5830b7_0    conda-forge
libiconv                  1.17                 h166bdaf_0    conda-forge
liblapack                 3.9.0           17_linux64_openblas    conda-forge
libllvm10                 10.0.1               he513fc3_3    conda-forge
libnghttp2                1.52.0               h61bc06f_0    conda-forge
libnsl                    2.0.0                h7f98852_0    conda-forge
libopenblas               0.3.23          pthreads_h80387f5_0    conda-forge
libpng                    1.6.39               h753d276_0    conda-forge
libpq                     12.15                hdbd6064_1  
libprotobuf               3.20.3               h3eb15da_0    conda-forge
libsodium                 1.0.18               h36c2ea0_1    conda-forge
libsqlite                 3.42.0               h2797004_0    conda-forge
libssh2                   1.11.0               h0841786_0    conda-forge
libstdcxx-ng              13.1.0               hfd8a6a1_0    conda-forge
libthrift                 0.15.0               h1795dd8_2  
libtiff                   4.3.0                h6f004c6_2    conda-forge
libuuid                   2.38.1               h0b41bf4_0    conda-forge
libwebp                   1.2.4                h11a3e52_1  
libwebp-base              1.2.4                h5eee18b_1  
libxcb                    1.15                 h0b41bf4_0    conda-forge
libxkbcommon              1.0.1                hfa300c1_0  
libxml2                   2.9.14               h74e7548_0  
libxslt                   1.1.35               h4e12654_0  
libzlib                   1.2.13               hd590300_5    conda-forge
locket                    1.0.0              pyhd8ed1ab_0    conda-forge
lz4                       4.3.2           py310h0cfdcf0_0    conda-forge
lz4-c                     1.9.4                hcb278e6_0    conda-forge
markdown                  3.4.4                    pypi_0    pypi
markupsafe                2.1.3           py310h2372a71_0    conda-forge
matplotlib                3.7.2           py310hff52083_0    conda-forge
matplotlib-base           3.7.2           py310hf38f957_0    conda-forge
matplotlib-inline         0.1.6              pyhd8ed1ab_0    conda-forge
mergedeep                 1.3.4                    pypi_0    pypi
mkdocs                    1.5.2                    pypi_0    pypi
msgpack-python            1.0.5           py310hdf3cbec_0    conda-forge
mtscomp                   1.0.2                    pypi_0    pypi
munkres                   1.0.7                      py_1    bioconda
ncurses                   6.4                  hcb278e6_0    conda-forge
nest-asyncio              1.5.6              pyhd8ed1ab_0    conda-forge
nspr                      4.35                 h27087fc_0    conda-forge
nss                       3.89                 he45b914_0    conda-forge
numpy                     1.25.2          py310ha4c1d20_0    conda-forge
olefile                   0.46               pyh9f0ad1d_1    conda-forge
openjpeg                  2.5.0                h7d73246_0    conda-forge
openssl                   3.1.2                hd590300_0    conda-forge
orc                       1.7.4                hb3bc3d3_1  
packaging                 23.1               pyhd8ed1ab_0    conda-forge
pandas                    2.0.3           py310h7cbd5c2_1    conda-forge
param                     1.13.0                   pypi_0    pypi
parso                     0.8.3              pyhd8ed1ab_0    conda-forge
partd                     1.4.0              pyhd8ed1ab_0    conda-forge
pathspec                  0.11.2                   pypi_0    pypi
pcre2                     10.40                hc3806b6_0    conda-forge
pexpect                   4.8.0              pyh1a96a4e_2    conda-forge
phy                       2.0b5                    pypi_0    pypi
phylib                    2.4.3                    pypi_0    pypi
pickleshare               0.7.5                   py_1003    conda-forge
pillow                    8.4.0           py310h07f4688_0    conda-forge
pip                       23.2.1             pyhd8ed1ab_0    conda-forge
platformdirs              3.10.0             pyhd8ed1ab_0    conda-forge
pluggy                    1.2.0              pyhd8ed1ab_0    conda-forge
ply                       3.11                       py_1    conda-forge
pooch                     1.7.0              pyha770c72_3    conda-forge
prompt-toolkit            3.0.39             pyha770c72_0    conda-forge
prompt_toolkit            3.0.39               hd8ed1ab_0    conda-forge
psutil                    5.9.5           py310h1fa729e_0    conda-forge
pthread-stubs             0.4               h36c2ea0_1001    conda-forge
ptyprocess                0.7.0              pyhd3deb0d_0    conda-forge
pure_eval                 0.2.2              pyhd8ed1ab_0    conda-forge
pyarrow                   11.0.0          py310h468efa6_0  
pyct                      0.5.0                    pypi_0    pypi
pygments                  2.16.1             pyhd8ed1ab_0    conda-forge
pyopengl                  3.1.6              pyhd8ed1ab_1    conda-forge
pyparsing                 3.0.9              pyhd8ed1ab_0    conda-forge
pyqt                      5.15.7          py310h6a678d5_1  
pyqt5                     5.15.9                   pypi_0    pypi
pyqt5-qt5                 5.15.2                   pypi_0    pypi
pyqt5-sip                 12.11.0                  pypi_0    pypi
pyqtwebengine             5.15.6                   pypi_0    pypi
pyqtwebengine-qt5         5.15.2                   pypi_0    pypi
pysocks                   1.7.1              pyha2e5f31_6    conda-forge
pytest                    7.4.0              pyhd8ed1ab_0    conda-forge
python                    3.10.12         hd12c33a_0_cpython    conda-forge
python-dateutil           2.8.2              pyhd8ed1ab_0    conda-forge
python-tzdata             2023.3             pyhd8ed1ab_0    conda-forge
python_abi                3.10                    3_cp310    conda-forge
pytz                      2023.3             pyhd8ed1ab_0    conda-forge
pyyaml                    6.0             py310h5764c6d_5    conda-forge
pyyaml-env-tag            0.1                      pypi_0    pypi
pyzmq                     25.1.1          py310h5bbb5d0_0    conda-forge
qt-main                   5.15.2               h327a75a_7  
qt-webengine              5.15.9               hd2b0992_4  
qtconsole                 5.4.3              pyhd8ed1ab_0    conda-forge
qtconsole-base            5.4.3              pyha770c72_0    conda-forge
qtpy                      2.3.1              pyhd8ed1ab_0    conda-forge
qtwebkit                  5.212                h4eab89a_4  
re2                       2022.04.01           h27087fc_0    conda-forge
readline                  8.2                  h8228510_1    conda-forge
requests                  2.31.0             pyhd8ed1ab_0    conda-forge
responses                 0.23.2             pyhd8ed1ab_1    conda-forge
scikit-learn              1.3.0           py310hf7d194e_0    conda-forge
scipy                     1.11.1          py310ha4c1d20_0    conda-forge
setuptools                68.0.0             pyhd8ed1ab_0    conda-forge
sip                       6.6.2           py310h6a678d5_0  
six                       1.16.0             pyh6c4a22f_0    conda-forge
snappy                    1.1.10               h9fff704_0    conda-forge
sortedcontainers          2.4.0              pyhd8ed1ab_0    conda-forge
sqlite                    3.42.0               h2c6b66d_0    conda-forge
stack_data                0.6.2              pyhd8ed1ab_0    conda-forge
tblib                     1.7.0              pyhd8ed1ab_0    conda-forge
threadpoolctl             3.2.0              pyha21a80b_0    conda-forge
tk                        8.6.12               h27826a3_0    conda-forge
toml                      0.10.2             pyhd8ed1ab_0    conda-forge
tomli                     2.0.1              pyhd8ed1ab_0    conda-forge
toolz                     0.12.0             pyhd8ed1ab_0    conda-forge
tornado                   6.3.3           py310h2372a71_0    conda-forge
tqdm                      4.66.1                   pypi_0    pypi
traitlets                 5.9.0              pyhd8ed1ab_0    conda-forge
types-pyyaml              6.0.12.11          pyhd8ed1ab_0    conda-forge
typing-extensions         4.7.1                hd8ed1ab_0    conda-forge
typing_extensions         4.7.1              pyha770c72_0    conda-forge
tzdata                    2023c                h71feb2d_0    conda-forge
unicodedata2              15.0.0          py310h5764c6d_0    conda-forge
urllib3                   2.0.4              pyhd8ed1ab_0    conda-forge
utf8proc                  2.6.1                h27cfd23_0  
watchdog                  3.0.0                    pypi_0    pypi
wcwidth                   0.2.6              pyhd8ed1ab_0    conda-forge
wheel                     0.41.1             pyhd8ed1ab_0    conda-forge
xorg-libxau               1.0.11               hd590300_0    conda-forge
xorg-libxdmcp             1.1.3                h7f98852_0    conda-forge
xyzservices               2023.7.0           pyhd8ed1ab_0    conda-forge
xz                        5.2.6                h166bdaf_0    conda-forge
yaml                      0.2.5                h7f98852_2    conda-forge
zeromq                    4.3.4                h9c3ff4c_1    conda-forge
zict                      3.0.0              pyhd8ed1ab_0    conda-forge
zipp                      3.16.2             pyhd8ed1ab_0    conda-forge
zlib                      1.2.13               hd590300_5    conda-forge
zstd                      1.5.2                hfc55251_7    conda-forge

I would appreciate any suggestions people have on how to address this error. Thank you!

~Nick

nmtimme commented 8 months ago

Hi All!

I tried logging out and back on to the system I was using and it resolved the error. Weird. Thanks!

~Nick