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cortex-lab / phy

phy: interactive visualization and manual spike sorting of large-scale ephys data
BSD 3-Clause "New" or "Revised" License
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Crash in phy with Exception in paintGL #1243

Open StringXD opened 6 months ago

StringXD commented 6 months ago

I followed the instruction as the ReadMe wrote in a python 3.9 environment in my Windows Server and encountered the issues as #1193 and #1018, then I fixed the issues by downgrade the numpy to 1.23.1 and upgrade the opengl to 4.2. After that, I launched the phy, and the layout was stucked and the program crashed. The screenshot is shown below. image And the running log is shown below: 13:48:09.794 [D] init:68 Start capturing exceptions. 13:48:09.803 [D] model:619 Loading spike clusters. 13:48:09.808 [D] model:569 No channel shank file found. 13:48:09.811 [D] model:692 Loading templates. 13:48:09.815 [D] model:724 Templates are dense. 13:48:09.816 [W] model:667 Skipping spike waveforms that do not exist, they will be extracted on the fly from the raw data as needed. 13:48:09.817 [D] model:730 Loading the whitening matrix. 13:48:09.819 [D] model:737 Loading the inverse of the whitening matrix. 13:48:09.821 [D] model:766 Loading features. 13:48:09.826 [D] model:803 Loading template features. 13:48:09.827 [D] model:504 Load cluster_Amplitude.tsv. 13:48:09.828 [D] model:504 Load cluster_ContamPct.tsv. 13:48:09.829 [D] model:504 Load cluster_group.tsv. 13:48:09.830 [D] model:504 Load cluster_KSLabel.tsv. 13:48:10.150 [D] context:100 Initialize joblib cache dir at D:\XD\raw\kilosort3\.phy. 13:48:10.150 [D] context:101 Reducing the size of the cache if needed. 13:48:10.171 [D] base:102 Add filter high_pass. 13:48:10.172 [D] config:31 Load config file C:\Users\admin3\.phy\phy_config.py. 13:48:10.173 [D] plugin:145 Loading 0 plugins. 13:48:10.174 [D] context:126 Load memcache for phy.apps.base._get_mean_waveforms. 13:48:10.179 [D] context:126 Load memcache for phy.apps.base._get_mean_waveforms. 13:48:10.180 [D] context:126 Load memcache for phy.apps.base._get_template_waveforms. 13:48:10.182 [D] context:126 Load memcache for phy.apps.base.get_mean_spike_template_amplitudes. 13:48:10.183 [D] context:126 Load memcache for phy.apps.base.get_template_counts. 13:48:10.184 [D] context:126 Load memcache for phy.apps.base.get_template_for_cluster. 13:48:10.185 [D] context:126 Load memcache for phy.apps.template.gui.get_template_amplitude. 13:48:10.186 [D] context:126 Load memcache for phy.apps.base.get_cluster_amplitude. 13:48:10.187 [D] context:126 Load memcache for phy.apps.base.get_mean_firing_rate. 13:48:10.188 [D] context:126 Load memcache for phy.apps.base.get_best_channel. 13:48:10.195 [D] context:126 Load memcache for phy.apps.template.gui.get_best_channels. 13:48:10.195 [D] context:126 Load memcache for phy.apps.base.get_channel_shank. 13:48:10.196 [D] context:126 Load memcache for phy.apps.base.get_probe_depth. 13:48:10.197 [D] context:126 Load memcache for phy.apps.base.peak_channel_similarity. 13:48:10.200 [D] context:209 The file D:\XD\raw\kilosort3\.phy\new_cluster_id.pkl doesn't exist. 13:48:10.216 [D] context:185 Save data to D:\XD\raw\kilosort3\.phy\spikes_per_cluster.pkl. 13:48:10.225 [D] gui:463 Creating GUI. 13:48:10.234 [D] state:46 Load C:\Users\admin3.phy\TemplateGUI\state.json for GUIState. 13:48:10.235 [D] state:46 Load D:\XD\raw\kilosort3.phy\state.json for GUIState. 13:48:10.613 [D] gui:718 Add view ClusterView to GUI. 13:48:10.642 [D] gui:718 Add view SimilarityView to GUI. 13:48:10.690 [D] gui:718 Add view WaveformView to GUI. 13:48:10.698 [D] base:337 Set state for WaveformView. 13:48:10.712 [D] gui:718 Add view CorrelogramView to GUI. 13:48:10.715 [D] base:337 Set state for CorrelogramView. 13:48:10.744 [D] gui:718 Add view ISIView to GUI. 13:48:10.748 [D] base:337 Set state for ISIView. 13:48:10.775 [D] gui:718 Add view AmplitudeView to GUI. 13:48:10.779 [D] base:337 Set state for AmplitudeView. 13:48:10.805 [D] gui:718 Add view FiringRateView to GUI. 13:48:10.809 [D] base:337 Set state for FiringRateView. 13:48:10.839 [D] gui:718 Add view FiringRateView to GUI. 13:48:10.844 [D] base:337 Set state for FiringRateView (1). 13:48:10.890 [D] gui:718 Add view ProbeView to GUI. 13:48:10.896 [D] base:337 Set state for ProbeView. 13:48:10.924 [D] gui:718 Add view ClusterScatterView to GUI. 13:48:10.929 [D] base:337 Set state for ClusterScatterView. 13:48:10.929 [D] base:494 Set color scheme to random. 13:48:10.931 [D] base:1623 Adding default color schemes to ClusterScatterView. 13:48:11.175 [D] gui:519 Load the geometry state. 13:48:11.677 [D] base:702 Exception in paintGL: exception: access violation reading 0x0000000100000000

zm711 commented 6 months ago

Could you try to install with the include environment.yml provided in the repo? There have been updates. The only thing you need to do is when you download the environment.yml please edit it so that python =3.11 (due to a deprecation with imp) that hasn't been dealt with yet.