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cortex-lab / phy

phy: interactive visualization and manual spike sorting of large-scale ephys data
BSD 3-Clause "New" or "Revised" License
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PyQt5 issue with starting GUI #1250

Closed maycaj closed 1 month ago

maycaj commented 5 months ago

I am having an issue starting the PHY GUI. I consistently get an error with PyQt5 even after a reinstallation of anaconda and phy. Any suggestions would be greatly appreciated!

(phy2) NEIK2A72CM22B:kilosorting_laminar maycaj$ phy template-gui params.py
Traceback (most recent call last):
  File "/Users/maycaj/anaconda3/envs/phy2/bin/phy", line 5, in <module>
    from phy.apps import phycli
  File "/Users/maycaj/anaconda3/envs/phy2/lib/python3.11/site-packages/phy/apps/__init__.py", line 22, in <module>
    from phy.gui.qt import QtDialogLogger
  File "/Users/maycaj/anaconda3/envs/phy2/lib/python3.11/site-packages/phy/gui/__init__.py", line 6, in <module>
    from .qt import (
  File "/Users/maycaj/anaconda3/envs/phy2/lib/python3.11/site-packages/phy/gui/qt.py", line 33, in <module>
    from PyQt5.QtCore import (Qt, QByteArray, QMetaObject, QObject,  # noqa
ImportError: dlopen(/Users/maycaj/anaconda3/envs/phy2/lib/python3.11/site-packages/PyQt5/QtCore.abi3.so, 0x0002): Library not loaded: @rpath/QtCore.framework/Versions/5/QtCore
  Referenced from: <5DB832BD-87BC-3750-B686-5A0A711D09B3> /Users/maycaj/anaconda3/envs/phy2/lib/python3.11/site-packages/PyQt5/QtCore.abi3.so
  Reason: tried: '/Users/maycaj/anaconda3/envs/phy2/lib/python3.11/site-packages/PyQt5/Qt5/lib/QtCore.framework/Versions/5/QtCore' (no such file), '/Users/maycaj/anaconda3/envs/phy2/lib/python3.11/site-packages/PyQt5/Qt5/lib/QtCore.framework/Versions/5/QtCore' (no such file), '/Users/maycaj/anaconda3/envs/phy2/bin/../lib/QtCore.framework/Versions/5/QtCore' (no such file), '/Users/maycaj/anaconda3/envs/phy2/bin/../lib/QtCore.framework/Versions/5/QtCore' (no such file)
(phy2) NEIK2A72CM22B:kilosorting_laminar maycaj$ QTWEBENGINE_CHROMIUM_FLAGS="--single-process" phy template-gui params.py
Traceback (most recent call last):
  File "/Users/maycaj/anaconda3/envs/phy2/bin/phy", line 5, in <module>
    from phy.apps import phycli
  File "/Users/maycaj/anaconda3/envs/phy2/lib/python3.11/site-packages/phy/apps/__init__.py", line 22, in <module>
    from phy.gui.qt import QtDialogLogger
  File "/Users/maycaj/anaconda3/envs/phy2/lib/python3.11/site-packages/phy/gui/__init__.py", line 6, in <module>
    from .qt import (
  File "/Users/maycaj/anaconda3/envs/phy2/lib/python3.11/site-packages/phy/gui/qt.py", line 33, in <module>
    from PyQt5.QtCore import (Qt, QByteArray, QMetaObject, QObject,  # noqa
ImportError: dlopen(/Users/maycaj/anaconda3/envs/phy2/lib/python3.11/site-packages/PyQt5/QtCore.abi3.so, 0x0002): Library not loaded: @rpath/QtCore.framework/Versions/5/QtCore
  Referenced from: <5DB832BD-87BC-3750-B686-5A0A711D09B3> /Users/maycaj/anaconda3/envs/phy2/lib/python3.11/site-packages/PyQt5/QtCore.abi3.so
  Reason: tried: '/Users/maycaj/anaconda3/envs/phy2/lib/python3.11/site-packages/PyQt5/Qt5/lib/QtCore.framework/Versions/5/QtCore' (no such file), '/Users/maycaj/anaconda3/envs/phy2/lib/python3.11/site-packages/PyQt5/Qt5/lib/QtCore.framework/Versions/5/QtCore' (no such file), '/Users/maycaj/anaconda3/envs/phy2/bin/../lib/QtCore.framework/Versions/5/QtCore' (no such file), '/Users/maycaj/anaconda3/envs/phy2/bin/../lib/QtCore.framework/Versions/5/QtCore' (no such file)
(phy2) NEIK2A72CM22B:kilosorting_laminar maycaj$

My terminal output that includes 1) removing and re-installing anaconda 2) attempt at opening PHY Terminal Saved Output.txt

zm711 commented 4 months ago

Could you install with the environment.yaml. Just download it then edit it so that it says python<3.12.

maycaj commented 4 months ago

Hello, It looks like I am still getting the same error. (base)NEIK2A72CM22B:phy-master maycaj$ conda activate phy2 (phy2) NEIK2A72CM22B:phy-master maycaj$ cd /Users/maycaj/Documents/V1/kilosorting_laminar (phy2) NEIK2A72CM22B:kilosorting_laminar maycaj$ (phy2) NEIK2A72CM22B:kilosorting_laminar maycaj$ phy template-gui params.py Traceback (most recent call last): File "/Users/maycaj/anaconda3/envs/phy2/bin/phy", line 5, in <module> from phy.apps import phycli File "/Users/maycaj/anaconda3/envs/phy2/lib/python3.11/site-packages/phy/apps/__init__.py", line 22, in <module> from phy.gui.qt import QtDialogLogger File "/Users/maycaj/anaconda3/envs/phy2/lib/python3.11/site-packages/phy/gui/__init__.py", line 6, in <module> from .qt import ( File "/Users/maycaj/anaconda3/envs/phy2/lib/python3.11/site-packages/phy/gui/qt.py", line 33, in <module> from PyQt5.QtCore import (Qt, QByteArray, QMetaObject, QObject, # noqa ImportError: dlopen(/Users/maycaj/anaconda3/envs/phy2/lib/python3.11/site-packages/PyQt5/QtCore.abi3.so, 0x0002): Library not loaded: @rpath/QtCore.framework/Versions/5/QtCore Referenced from: <5DB832BD-87BC-3750-B686-5A0A711D09B3> /Users/maycaj/anaconda3/envs/phy2/lib/python3.11/site-packages/PyQt5/QtCore.abi3.so Reason: tried: '/Users/maycaj/anaconda3/envs/phy2/lib/python3.11/site-packages/PyQt5/Qt5/lib/QtCore.framework/Versions/5/QtCore' (no such file), '/Users/maycaj/anaconda3/envs/phy2/lib/python3.11/site-packages/PyQt5/Qt5/lib/QtCore.framework/Versions/5/QtCore' (no such file), '/Users/maycaj/anaconda3/envs/phy2/bin/../lib/QtCore.framework/Versions/5/QtCore' (no such file), '/Users/maycaj/anaconda3/envs/phy2/bin/../lib/QtCore.framework/Versions/5/QtCore' (no such file) (phy2) NEIK2A72CM22B:kilosorting_laminar maycaj$

zm711 commented 4 months ago

Could you do phy template-gui params.py --debug just so I can see the full output?

maycaj commented 4 months ago

It may be worth mentioning that I am on a 2023 apple M2 Max. Looks like we are getting the same output again, but not sure:

(phy2) NEIK2A72CM22B:kilosorting_laminar maycaj$ phy template-gui params.py --debug
Traceback (most recent call last):
  File "/Users/maycaj/anaconda3/envs/phy2/bin/phy", line 5, in <module>
    from phy.apps import phycli
  File "/Users/maycaj/anaconda3/envs/phy2/lib/python3.11/site-packages/phy/apps/__init__.py", line 22, in <module>
    from phy.gui.qt import QtDialogLogger
  File "/Users/maycaj/anaconda3/envs/phy2/lib/python3.11/site-packages/phy/gui/__init__.py", line 6, in <module>
    from .qt import (
  File "/Users/maycaj/anaconda3/envs/phy2/lib/python3.11/site-packages/phy/gui/qt.py", line 33, in <module>
    from PyQt5.QtCore import (Qt, QByteArray, QMetaObject, QObject,  # noqa
ImportError: dlopen(/Users/maycaj/anaconda3/envs/phy2/lib/python3.11/site-packages/PyQt5/QtCore.abi3.so, 0x0002): Library not loaded: @rpath/QtCore.framework/Versions/5/QtCore
  Referenced from: <5DB832BD-87BC-3750-B686-5A0A711D09B3> /Users/maycaj/anaconda3/envs/phy2/lib/python3.11/site-packages/PyQt5/QtCore.abi3.so
  Reason: tried: '/Users/maycaj/anaconda3/envs/phy2/lib/python3.11/site-packages/PyQt5/Qt5/lib/QtCore.framework/Versions/5/QtCore' (no such file), '/Users/maycaj/anaconda3/envs/phy2/lib/python3.11/site-packages/PyQt5/Qt5/lib/QtCore.framework/Versions/5/QtCore' (no such file), '/Users/maycaj/anaconda3/envs/phy2/bin/../lib/QtCore.framework/Versions/5/QtCore' (no such file), '/Users/maycaj/anaconda3/envs/phy2/bin/../lib/QtCore.framework/Versions/5/QtCore' (no such file)
(phy2) NEIK2A72CM22B:kilosorting_laminar maycaj$
zm711 commented 4 months ago

That is very worth mentioning thanks.

Macs deprecated the use of openGL, which unfortunately what is required for Phy. So at this time I highly doubt you'd be able to get it to work on a Mac. Sorry!