Output matrices from Kilosort 3 after phy curation

cortex-lab / phy

phy: interactive visualization and manual spike sorting of large-scale ephys data

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Output matrices from Kilosort 3 after phy curation #1254

Open MarcoUniPr opened 4 months ago

MarcoUniPr commented 4 months ago

Hi,

I managed to successfully run Kilosort 3 and visualize the output in Phy. Within the output matrices from Kilosort 3, I can access various pieces of information, including spike_templates.npy and the corresponding spike_times.npy data. However, I am encountering difficulty in locating information regarding the corresponding "channel" for the spike_time and spike_templates.

Could you please provide guidance or assistance on this matter?

Thank you for your support.

Best regards, Marco

zm711 commented 4 months ago

There are a mix of files: channel_map.npy, channel_positions.npy. They have a particular format so I'll include a link to the docs here. That link goes through all the files so you can figure out exactly how you want to use that info.