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cortex-lab / phy

phy: interactive visualization and manual spike sorting of large-scale ephys data
BSD 3-Clause "New" or "Revised" License
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Can't create FeatureViews with Kilosort4 output. #1267

Closed gkBCCN closed 3 months ago

gkBCCN commented 3 months ago

I've tested Kilosort 4 with multiple datasets, including the sample data in the Kilosort 4 basic tutorial. For all datasets, Phy2 cannot open the FeatureView, the TemplateFeatureView, nor the feature amplitudes in AmplitudeView. It seems to otherwise work fine.

The python version in the phy2 environment is < 3.12 (occurs for both 3.9 and 3.11). The problem does not occur for Kilosort 2.5 output.

gkBCCN commented 3 months ago

I was able to get FeatureView to work by using: phy extract-waveforms params.py in the console and reopening phy (see #1145). Feature AmplitudeView and TemplateFeatureView still don't work.