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cortex-lab / phy

phy: interactive visualization and manual spike sorting of large-scale ephys data
BSD 3-Clause "New" or "Revised" License
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phy does not find module imp #1272

Closed ucsfidl closed 1 month ago

ucsfidl commented 2 months ago

I installed phy on an Ubuntu 22.04 LTS machine with a fresh perfectly working version of Anaconda exactly as specified on the github page (in italics below) and got the error at the bottom. Phy could not find the module imp.py Earlier version of phy installed on other machines were fine.

_conda create -n phy2 -y cython dask h5py joblib matplotlib numpy pillow pip pyopengl pyqt pyqtwebengine pytest python qtconsole requests responses scikit-learn scipy traitlets conda activate phy2 pip install git+https://github.com/cortex-lab/phy.git cd mykilosort_outputfolder phy template-gui params.py

(phy2) idl@mps-pc59:/nas/data/2019/2019_06_25-ks$ phy template-gui params.py Traceback (most recent call last): File "/home/idl/yes/envs/phy2/bin/phy", line 5, in from phy.apps import phycli File "/home/idl/yes/envs/phy2/lib/python3.12/site-packages/phy/init.py", line 21, in from .utils.config import load_master_config File "/home/idl/yes/envs/phy2/lib/python3.12/site-packages/phy/utils/init.py", line 8, in from .plugin import IPlugin, attach_plugins File "/home/idl/yes/envs/phy2/lib/python3.12/site-packages/phy/utils/plugin.py", line 14, in import imp ModuleNotFoundError: No module named 'imp'

zm711 commented 2 months ago

imp was removed from python 3.12. You need to specify <3.12. My advice would be to download the environment.yaml and then edit the line with python and set it to 

python=3.11
zm711 commented 1 month ago

Should be fixed now.