cosmo-team cosmo-issues issues

cosmo-team / cosmo-issues

Issue repository for Cosmo (separate until we can transfer issues between repositories nicely - ignore code)

http://www.github.com/cosmo-team/cosmo

GNU General Public License v3.0

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issues

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Function to merge dBGs

#204 alexbowe opened 8 years ago
0
Use sd_vector_builder during colour matrix construction

#203 alexbowe opened 8 years ago
0
Calculate progress statistics during merging

#202 alexbowe opened 8 years ago
0
Gather statistics of frequency of kmers after union

#201 alexbowe opened 8 years ago
0
Verify path divergence algorithm matches Cortex

#200 alexbowe opened 8 years ago
0
Add in-memory construction (for use when missing STXXL config)

#199 alexbowe opened 8 years ago
0
Update Cosmo to work with Boost API changes past v1.54

#198 alexbowe opened 8 years ago
0
Get Cosmo compiling with Clang

#197 alexbowe opened 8 years ago
0
Get Cosmo compiling on Oak

#196 alexbowe closed 8 years ago
1
Add support for node lookup by label

#195 alexbowe opened 8 years ago
0
Fix broken incoming() in non-shifted dBG representation

#194 alexbowe opened 8 years ago
0
Attempt simulation of iterative dBG assembly with varord

#193 alexbowe opened 8 years ago
0
Make new varord release on repo

#192 alexbowe closed 8 years ago
1
Use TCBB format

#191 alexbowe closed 8 years ago
1
Variable Order Paper

#190 alexbowe closed 8 years ago
0
Update varord paper

#189 alexbowe closed 8 years ago
1
Improve memory efficiency

#188 alexbowe opened 8 years ago
0
Improve dummy shift merging

#187 alexbowe opened 8 years ago
0
Add zenodo DOI badge

#186 alexbowe opened 8 years ago
0
Update SDSL's construct() to accept templated input iterator

#185 alexbowe closed 8 years ago
1
Disable STXXL-MSGs and make config for COSMO_LOG

#184 alexbowe opened 8 years ago
0
Fix backward() and indegree in dummy-free representation

#183 alexbowe opened 8 years ago
0
Refactor Input Parsing

#182 alexbowe opened 8 years ago
0
Use techniques in "why GNU grep is fast" in path divergence

#181 mmuggli opened 8 years ago
3
Can we store colours for just supernodes instead?

#180 alexbowe opened 8 years ago
0
efficiently check nodes for a batch of colors

#179 mmuggli opened 8 years ago
1
Support indirect sorting (so colour payload is an index rather than bitvector)

#178 mmuggli opened 8 years ago
4
Simulate Table A with multiple passes of Table B

#177 alexbowe opened 8 years ago
0
Remove STXXL materialize calls

#176 alexbowe opened 8 years ago
0
Make W construction external again

#175 alexbowe closed 8 years ago
1
Improve BGL adapter

#174 alexbowe opened 8 years ago
0
Add coverage data for colors

#173 alexbowe opened 8 years ago
0
Solve forward() issue with dummy-free representation

#172 alexbowe closed 8 years ago
0
Add text parsing

#171 alexbowe opened 8 years ago
1
Re-add LCS and dummy shift support

#170 alexbowe closed 8 years ago
0
Add support for custom alphabets

#169 alexbowe opened 8 years ago
0
Fix compiler warnings

#168 alexbowe closed 8 years ago
1
Write Application Note

#167 alexbowe opened 8 years ago
0
Make HITSeq presentation video

#166 alexbowe closed 8 years ago
0
Issue to test Issue Transfer

#165 alexbowe closed 8 years ago
3
Adapt color bitvector to density of input

#164 alexbowe opened 8 years ago
0
Test complemented color-major matrix in sd_vector

#163 alexbowe opened 8 years ago
1
Ease dependency management

#162 alexbowe opened 8 years ago
0
Adapt to colour density

#161 alexbowe opened 8 years ago
0
Make external memory bit_vector

#160 alexbowe opened 8 years ago
5
Fix KMC read-length limit

#159 alexbowe opened 8 years ago
1
Leverage the sorted nature of our input

#158 mmuggli opened 8 years ago
0
Optimise bubble calling

#157 alexbowe opened 8 years ago
0
Postpone colour lookup until after traversal

#156 alexbowe opened 8 years ago
2
Update Readme

#155 alexbowe opened 8 years ago
0