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cougarlj / COMPSRA

COMPSRA: a COMprehensive Platform for Small RNA-Seq data Analysis
https://regepi.bwh.harvard.edu/circurna/
GNU General Public License v3.0
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Fails to download the star #3

Closed mars188 closed 4 years ago

mars188 commented 4 years ago

Hi, I ran the following command to download the star: java -jar COMPSRA.jar -tk -dr -ck star I get the following error:

16:21:44.867 [main] INFO edu.harvard.channing.compass.utility.Download - Start to download the resource: https://regepi.bwh.harvard.edu/circurna/bundle_v1/plug/star/STAR-2.5.3a.zip 16:21:46.237 [main] INFO edu.harvard.channing.compass.utility.Download - Fail to download the resource: https://regepi.bwh.harvard.edu/circurna/bundle_v1/plug/star/STAR-2.5.3a.zip java.io.FileNotFoundException: https://regepi.bwh.harvard.edu/circurna/bundle_v1/plug/star/STAR-2.5.3a.zip at java.base/sun.net.www.protocol.http.HttpURLConnection.getInputStream0(HttpURLConnection.java:1909) at java.base/sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1509) at java.base/sun.net.www.protocol.https.HttpsURLConnectionImpl.getInputStream(HttpsURLConnectionImpl.java:245) at org.apache.commons.io.FileUtils.copyURLToFile(FileUtils.java:1484) at edu.harvard.channing.compass.utility.Download.download(Download.java:58) at edu.harvard.channing.compass.toolkit.DownloadResource.downloadResource(DownloadResource.java:211) at edu.harvard.channing.compass.toolkit.DownloadResource.runKit(DownloadResource.java:45) at edu.harvard.channing.compass.toolkit.ProduceTK.Dispatch(ProduceTK.java:41) at edu.harvard.channing.compass.core.COMPSRA.main(COMPSRA.java:54) 16:21:46.244 [main] INFO edu.harvard.channing.compass.core.Produce - ToolKit module was completed.

Seems like the link to star is broken. Can someone help me to fix it, please?

Thanks in advance!

cougarlj commented 4 years ago

Hi, mars188,

Thanks for the bug report. I have checked the resource and uploaded the file again. Please run the command from COMPSRA again. If any problem, please let me know.

Best Wishes, Jiang Li

mars188 commented 4 years ago

Hello Jiang, thank you for fixing the bug. It's working now! cheers!