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cougarlj / COMPSRA

COMPSRA: a COMprehensive Platform for Small RNA-Seq data Analysis
https://regepi.bwh.harvard.edu/circurna/
GNU General Public License v3.0
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Change path to bundle_v1? #33

Open asherkhb opened 2 years ago

asherkhb commented 2 years ago

It seems that by default, bundle_v1/ must be in the current working directory. Is it possible to provide an alternative path to bundle_v1?

cougarlj commented 2 years ago

Dear asherhb,

Sorry for the inconvenience. The configuration was written in the source code and it couldn't be changed to another directory currently. I will provide an independent configuration file for COMPSRA in the next release.

Best Wishes, Jiang LI

asherkhb commented 2 years ago

Thank you for the quick response!

I see where that is written, and should be able to make the update myself in this case, but would you be able to share the dependencies/versions so I can re-compile? (maybe pom.xml or similar?)

Thanks again!

cougarlj commented 2 years ago

Dear asherkhb,

Sorry for the inconvenient design. I have attached all the configuration files below and hope this can help you to re-compile COMPSRA.

Best Wishes, Jiang Li

COMPSRA_Configuration.zip

asherkhb commented 2 years ago

Thank you!!