cougarlj
commented
1 year ago Dear vetmohit89,
Sorry for the late reply. The obj file is a binary file made by Java Objective Class. However, the annotation of snoRNA comes from GENCODE and you can access this file online ( https://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/release_19/gencode.v19.annotation.gff3.gz). Hope this helps.
Best Wishes, Jiang Li
On Tue, Jan 31, 2023 at 3:44 AM vetmohit89 @.***> wrote:
Hello,
Thank you so much for preparing this awesome tool. I am wondering if it is possible to read gencode_snoRNA_hg19.obj database. I am surprised we only got some ~160 snoRNA expressed in our raw data. I wanted to see from this database if we are annotating all the snoRNAs which are present in BAM file?
Thank you, Mohit
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Hello,
Thank you so much for preparing this awesome tool. I am wondering if it is possible to read gencode_snoRNA_hg19.obj database. I am surprised we only got some ~160 snoRNA expressed in our raw data. I wanted to see from this database if we are annotating all the snoRNAs which are present in BAM file?
Thank you, Mohit