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cougarlj / COMPSRA

COMPSRA: a COMprehensive Platform for Small RNA-Seq data Analysis
https://regepi.bwh.harvard.edu/circurna/
GNU General Public License v3.0
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Start and End position of small RNAs #8

Closed mariah9875 closed 3 years ago

mariah9875 commented 3 years ago

Hello. I am working with the Annotation module of COMPSRA, and I was wondering if I could extract somehow the location of the small RNAs that are in the annotation report (countfile)?

All the best, María

cougarlj commented 3 years ago

Dear Maria,

The annotation report only provides how many different types of RNAs are annotated by reads. If you want to extract the small RNAs by location, you can refer to the gff3 files (https://regepi.bwh.harvard.edu/circurna/bundle_v1/db/miRBase/miRBase_hg38.gff3).

Best Wishes, Jiang Li

mariah9875 commented 3 years ago

Thank you for this information Jiang Li!

All the best, María

cougarlj commented 3 years ago

You are welcome.