Bump umap-learn from 0.5.3 to 0.5.5

[dependabot[bot]]

Bumps umap-learn from 0.5.3 to 0.5.5.

Release notes

Sourced from umap-learn's releases.

0.5.5 patch release

What's Changed

• fix interactive plot if hover_data but no tools is provided by @​timoleistner in lmcinnes/umap#1058
• Fixed bug causing digits data bokeh plot in tutorial to break by @​Liqs-v2 in lmcinnes/umap#1067
• Make tbb requirement optional by @​mithaler in lmcinnes/umap#1066
• Fix pkg_resources deprecation warning by @​laclouis5 in lmcinnes/umap#1072

New Contributors

• @​timoleistner made their first contribution in lmcinnes/umap#1058
• @​Liqs-v2 made their first contribution in lmcinnes/umap#1067
• @​mithaler made their first contribution in lmcinnes/umap#1066
• @​laclouis5 made their first contribution in lmcinnes/umap#1072

Full Changelog: https://github.com/lmcinnes/umap/compare/0.5.4...release-0.5.5

Patch release 0.5.4

What's Changed

• Add numerically stable cross entropy loss by @​jgraving in lmcinnes/umap#856
• Fix AlignedUMAP.update by @​hndgzkn in lmcinnes/umap#861
• Fixed numerical issue in make_epochs_per_sample by @​GregDemand in lmcinnes/umap#875
• Fix in1d() return type issue by @​GregDemand in lmcinnes/umap#877
• Fix use of relation_dicts in expand_relations by @​GregDemand in lmcinnes/umap#880
• Fix indexing issue with relations array by @​GregDemand in lmcinnes/umap#882
• Added uniqueness flag to intersect1d by @​SkBlaz in lmcinnes/umap#896
• Fix typos in docstrings by @​sky-2002 in lmcinnes/umap#903
• consistency between install_requires and requirements.txt by @​jlmelville in lmcinnes/umap#908
• Search index is optional for precomputed_knn by @​jlmelville in lmcinnes/umap#909
• Fix doc build (a bit) by @​jlmelville in lmcinnes/umap#910
• Fix the doc build by @​jlmelville in lmcinnes/umap#913
• PCA initialization option by @​jlmelville in lmcinnes/umap#911
• Allow points to be passed to umap.plot.points by @​dribnet in lmcinnes/umap#912
• feature: add ability to specify tools to interactive charts so richer exploration with images and other content is possible by @​suneeta-mall in lmcinnes/umap#858
• tighten test_umap_trustworthiness_random_init bound by @​austereantelope in lmcinnes/umap#850
• tighten test_umap_sparse_trustworthiness bound by @​austereantelope in lmcinnes/umap#851
• Get intermediate results at different epochs by @​matthieuheitz in lmcinnes/umap#696
• Update penguins doc by @​jlmelville in lmcinnes/umap#914
• ignore force approximation with precomputed knn by @​jlmelville in lmcinnes/umap#927
• Update deprecated matplotlib colormap registry by @​yannikschaelte in lmcinnes/umap#929
• Esm metagenomic atlas to Interactive Visualizations by @​BioGeek in lmcinnes/umap#936
• get_feature_names_out for UMAP + tests by @​CarloLepelaars in lmcinnes/umap#939
• Updated densMAP citation in README by @​hhcho in lmcinnes/umap#945
• sklearn parwise distances doesn't support np.matrix anymore by @​lmcinnes in lmcinnes/umap#946
• Minor performance improvements by @​rohan-shah-nearmap in lmcinnes/umap#948
• Anticipate stricter asarray handling in numpy by @​lmcinnes in lmcinnes/umap#952
• Aligned umap issues by @​GregDemand in lmcinnes/umap#958
• Update densmap_demo.rst by @​aizardar in lmcinnes/umap#973
• Allow UMAP to accept data with nan or inf values by @​SamKlier in lmcinnes/umap#977
• new spectral initialization option: a truncated SVD-warmed lobpcg by @​jlmelville in lmcinnes/umap#924
• fix: fix numpy.int and numpy.float deprecation to be compatible with numpy >= 1.20.0 by @​TTTPOB in lmcinnes/umap#1010
• Docs | Add missing space in precomputed_k-nn.rst by @​Odessit007 in lmcinnes/umap#1014

... (truncated)

Commits

• 32ed466 Update setup.py version bump
• 5adc079 Update README.rst
• 9568804 Update azure-pipelines.yml re-enable numba; will damage coverage
• 14f92ca If a Series with row index is passed as labels and values it can mess things ...
• 933182e Update azure-pipelines.yml to deprecate 3.7 and add 3.11
• a2346c0 Merge pull request #1072 from laclouis5/pkg-resource-deprecation-fix
• c427b48 Fix pkg_resources deprecation warning
• 435d1ce Merge pull request #1066 from DataDog/mickey.thaler/no-tbb-requirement
• d2cf201 Merge pull request #1067 from Liqs-v2/patch-1
• 1fbd192 Fixed bug causing bokeh plot to break
• Additional commits viewable in compare view

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[dependabot[bot]]

Looks like umap-learn is up-to-date now, so this is no longer needed.