Add qMRI microstructure results to spinal cord analysis

courtois-neuromod / anat-processing-book

A notebook that describes the processing of anatomical data for the Courtois-Neuromod Project.

https://courtois-neuromod.github.io/anat-processing-book/

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Add qMRI microstructure results to spinal cord analysis #23

Closed jcohenadad closed 3 years ago

jcohenadad commented 3 years ago

The following results should be added as an interactive figure:

DWI_FA.csv
DWI_MD.csv
DWI_RD.csv
MTR.csv
MTsat.csv
T1.csv

The column to extract is WA().

Like for the T1w and T2w CSA, group per subject and show each session as a dot.

zelenkastiot commented 3 years ago

Hi @jcohenadad , I added this figure (901b43f85288dd97c8c21c2d74feef3d42661a3f)

Wasn't sure about the plot title or the unit for WA()

jcohenadad commented 3 years ago

The title is great. The unit is metric-dependent so i suggest putting it directly in the legend in case you cannot have a different ylabel when you select a different metric. Some metrics are unitless

the legend would be: FA MD [mm^2/s] RD [mm^2/s] MTR MTsat T1 [s]

zelenkastiot commented 3 years ago

I added the changes in this plot with this commit: 7b307fd922907d4158bfa809c692e7e3786bdee4

I have made ylabel customizable so I added the units there + you have the unit of the metric on hover as well:

jcohenadad commented 3 years ago

Brilliant! Can you please remove the "WA()" in the displayed message? Because people won't know what the acronym means. You can keep the rest.

zelenkastiot commented 3 years ago

Modified the hoverinfo: 7e70aa2d31c3fe7942bb5d8fd19199b15d185359

jcohenadad commented 3 years ago

Issue is fixed.