Mix between subjects? - Githubissues

courtois-neuromod / anat-processing-book

A notebook that describes the processing of anatomical data for the Courtois-Neuromod Project.

https://courtois-neuromod.github.io/anat-processing-book/

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Mix between subjects? #32

Closed jcohenadad closed 2 years ago

jcohenadad commented 3 years ago

These two plots for the brain and spinal cord show a different number of sessions. I suspect a mixup between subject numbering (eg: subject 4 in spinal cord corresponding to subject 5 in the brain):

Screen Shot 2021-08-01 at 8 56 18 PM

Screen Shot 2021-08-01 at 8 56 01 PM

zelenkastiot commented 3 years ago

If understood correctly the issue is the correct subjects displayed in the plots. But, according to this output, which extracts the values/sessions/subjects, what it displays in coresponds to the csv data.

Output/plotting in code:

Rows in spinal data [csa-GM_T2s.csv]:

Rows in brain data [results-neuromod-anat-brain-qmri.csv]:

jcohenadad commented 3 years ago

OK, it should be fine then. So we need to understand why the number of sessions differ between the brain and the spinal cord results. Do you mind digging into that?

zelenkastiot commented 3 years ago

Sure, I will look into it. Brief you tomorrow

jcohenadad commented 3 years ago

@zelenkastiot do you have an update on this?

mathieuboudreau commented 3 years ago

Pinging @zelenkastiot – any ETA on looking into this?

mathieuboudreau commented 2 years ago

On it - check if subject names are bids-compliant in the results CSV

mathieuboudreau commented 2 years ago

Bug resolved in V2