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courtois-neuromod / anat-processing

Pipeline to process anatomical data, including microstructure metrics from DWI and MT data
MIT License
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Implement manual correction strategy #4

Open jcohenadad opened 3 years ago

jcohenadad commented 3 years ago

Context

When running automatic pipelines, processing fails in X % of the case. E.g., segmentation leaks. So, we would like to be able to:

Suggestions

One way to do it, is to add a suffix -manual to all manual corrections and upload those in the derivatives. Then, the pipeline looks for the file with "-manual" in the derivatives and use them.

Some inspiration from the spine-generic project.

agahkarakuzu commented 2 years ago

SCT is no longer using Nextflow, but the issue may be still relevant. I defer this one to @jcohenadad.

jcohenadad commented 2 years ago

SCT is no longer using Nextflow, but the issue may be still relevant. I defer this one to @jcohenadad.

issue is still relevant-- i removed "NF" in the title