search

courtois-neuromod / cneuromod_docs

Documentation of the Courtois NeuroMod project
http://docs.cneuromod.ca/
Other
6 stars 11 forks source link

error when downloading data #83

Closed jcohenadad closed 1 year ago

jcohenadad commented 1 year ago

following the doc: https://docs.cneuromod.ca/en/latest/ACCESS.html#downloading-the-dataset

i'm getting this:

Terminal output ```console julien-macbook:~/data $ datalad install -r git@github.com:courtois-neuromod/cneuromod.git It is highly recommended to configure Git before using DataLad. Set both 'user.name' and 'user.email' configuration variables. [INFO ] Unable to parse git config from origin [INFO ] It is highly recommended to configure Git before using DataLad. Set both 'user.name' and 'user.email' configuration variables. [INFO ] Remote origin does not have git-annex installed; setting annex-ignore [INFO ] This could be a problem with the git-annex installation on the remote. Please make sure that git-annex-shell is available in PATH when you ssh into the remote. Once you have fixed the git-annex installation, run: git annex enableremote origin [INFO ] It is highly recommended to configure Git before using DataLad. Set both 'user.name' and 'user.email' configuration variables. [INFO ] It is highly recommended to configure Git before using DataLad. Set both 'user.name' and 'user.email' configuration variables. [INFO ] RIA store unavailable. -caused by- file:///project/rrg-pbellec/ria-beluga/ria-layout-version not found. -caused by- [Errno 2] No such file or directory: '/project/rrg-pbellec/ria-beluga/ria-layout-version' [INFO ] access to 1 dataset sibling cneuromod.anat.mri.sensitive not auto-enabled, enable with: | datalad siblings -d "/Users/julien/data/cneuromod" enable -s cneuromod.anat.mri.sensitive install(ok): /Users/julien/data/cneuromod (dataset) [INFO ] Ensuring presence of Dataset(/Users/julien/data/cneuromod) to get /Users/julien/data/cneuromod [INFO ] scanning for annexed files (this may take some time) [INFO ] Unable to parse git config from origin [INFO ] It is highly recommended to configure Git before using DataLad. Set both 'user.name' and 'user.email' configuration variables. [INFO ] Remote origin does not have git-annex installed; setting annex-ignore [INFO ] This could be a problem with the git-annex installation on the remote. Please make sure that git-annex-shell is available in PATH when you ssh into the remote. Once you have fixed the git-annex installation, run: git annex enableremote origin [INFO ] It is highly recommended to configure Git before using DataLad. Set both 'user.name' and 'user.email' configuration variables. [INFO ] It is highly recommended to configure Git before using DataLad. Set both 'user.name' and 'user.email' configuration variables. [INFO ] RIA store unavailable. -caused by- file:///data/neuromod/ria-sequoiaria-layout-version not found. -caused by- [Errno 2] No such file or directory: '/data/neuromod/ria-sequoia/ria-layout-version' [INFO ] Reset branch 'main' to 6bbf0043 (from 79f7caa6) to avoid a detached HEAD install(ok): /Users/julien/data/cneuromod/anat (dataset) [INFO ] Unable to parse git config from origin [INFO ] It is highly recommended to configure Git before using DataLad. Set both 'user.name' and 'user.email' configuration variables. [INFO ] Remote origin does not have git-annex installed; setting annex-ignore [INFO ] This could be a problem with the git-annex installation on the remote. Please make sure that git-annex-shell is available in PATH when you ssh into the remote. Once you have fixed the git-annex installation, run: git annex enableremote origin [INFO ] It is highly recommended to configure Git before using DataLad. Set both 'user.name' and 'user.email' configuration variables. [INFO ] It is highly recommended to configure Git before using DataLad. Set both 'user.name' and 'user.email' configuration variables. [INFO ] RIA store unavailable. -caused by- file:///project/rrg-pbellec/ria-beluga/ria-layout-version not found. -caused by- [Errno 2] No such file or directory: '/project/rrg-pbellec/ria-beluga/ria-layout-version' [INFO ] Reset branch 'main' to 6b87b05a (from 454b5b11) to avoid a detached HEAD install(ok): /Users/julien/data/cneuromod/code/ds_prep (dataset) [INFO ] Unable to parse git config from origin [INFO ] It is highly recommended to configure Git before using DataLad. Set both 'user.name' and 'user.email' configuration variables. [INFO ] Remote origin does not have git-annex installed; setting annex-ignore [INFO ] This could be a problem with the git-annex installation on the remote. Please make sure that git-annex-shell is available in PATH when you ssh into the remote. Once you have fixed the git-annex installation, run: git annex enableremote origin [INFO ] It is highly recommended to configure Git before using DataLad. Set both 'user.name' and 'user.email' configuration variables. [INFO ] It is highly recommended to configure Git before using DataLad. Set both 'user.name' and 'user.email' configuration variables. [INFO ] RIA store unavailable. -caused by- file:///project/rrg-pbellec/ria-beluga/ria-layout-version not found. -caused by- [Errno 2] No such file or directory: '/project/rrg-pbellec/ria-beluga/ria-layout-version' [INFO ] Reset branch 'main' to fd41b693 (from d2306e76) to avoid a detached HEAD install(ok): /Users/julien/data/cneuromod/docs (dataset) [INFO ] scanning for annexed files (this may take some time) [INFO ] Unable to parse git config from origin [INFO ] It is highly recommended to configure Git before using DataLad. Set both 'user.name' and 'user.email' configuration variables. [INFO ] Remote origin does not have git-annex installed; setting annex-ignore [INFO ] This could be a problem with the git-annex installation on the remote. Please make sure that git-annex-shell is available in PATH when you ssh into the remote. Once you have fixed the git-annex installation, run: git annex enableremote origin [INFO ] It is highly recommended to configure Git before using DataLad. Set both 'user.name' and 'user.email' configuration variables. [INFO ] It is highly recommended to configure Git before using DataLad. Set both 'user.name' and 'user.email' configuration variables. [INFO ] RIA store unavailable. -caused by- file:///project/def-pbellec/ria-narvalria-layout-version not found. -caused by- [Errno 2] No such file or directory: '/project/def-pbellec/ria-narval/ria-layout-version' [INFO ] It is highly recommended to configure Git before using DataLad. Set both 'user.name' and 'user.email' configuration variables. [INFO ] It is highly recommended to configure Git before using DataLad. Set both 'user.name' and 'user.email' configuration variables. [INFO ] RIA store unavailable. -caused by- file:///data/neuromod/ria-sequoiaria-layout-version not found. -caused by- [Errno 2] No such file or directory: '/data/neuromod/ria-sequoia/ria-layout-version' [INFO ] access to 3 dataset siblings ria-narval-storage, s3unf.cneuromod.friends.mri.sensitive, ria-beluga-storage not auto-enabled, enable with: | datalad siblings -d "/Users/julien/data/cneuromod/friends" enable -s SIBLING [INFO ] Reset branch 'main' to bf5a6cd1 (from c8fe05c3) to avoid a detached HEAD install(ok): /Users/julien/data/cneuromod/friends (dataset) [INFO ] scanning for annexed files (this may take some time) [INFO ] Unable to parse git config from origin [INFO ] It is highly recommended to configure Git before using DataLad. Set both 'user.name' and 'user.email' configuration variables. [INFO ] Remote origin does not have git-annex installed; setting annex-ignore [INFO ] This could be a problem with the git-annex installation on the remote. Please make sure that git-annex-shell is available in PATH when you ssh into the remote. Once you have fixed the git-annex installation, run: git annex enableremote origin [INFO ] It is highly recommended to configure Git before using DataLad. Set both 'user.name' and 'user.email' configuration variables. [INFO ] It is highly recommended to configure Git before using DataLad. Set both 'user.name' and 'user.email' configuration variables. The authenticity of host 'beluga.computecanada.ca (132.219.136.1)' can't be established.s/ datasets] ED25519 key fingerprint is SHA256:lwmU2AS/oQ0Z2M1a31yRAxlKPcMlQuBPFP+ji/HorHQ. This key is not known by any other names Are you sure you want to continue connecting (yes/no/[fingerprint])? y Please type 'yes', 'no' or the fingerprint: yes [INFO ] Warning: Permanently added 'beluga.computecanada.ca' (ED25519) to the list of known hosts. julien@beluga.computecanada.ca's password: | 4.00/7.00 [01:01<00:14, 4.90s/ datasets] ```

there is no mention about beluga passwd in the doc, so not sure what to do

jcohenadad commented 1 year ago

tried again with setting:

export AWS_ACCESS_KEY_ID=jcohenadad
export AWS_SECRET_ACCESS_KEY=XXXX

blocking here:

Terminal output ```console julien-macbook:~/data $ datalad install -r git@github.com:courtois-neuromod/cneuromod.git It is highly recommended to configure Git before using DataLad. Set both 'user.name' and 'user.email' configuration variables. [INFO ] Ensuring presence of Dataset(/Users/julien/data/cneuromod) to get /Users/julien/data/cneuromod [INFO ] scanning for annexed files (this may take some time) [INFO ] Unable to parse git config from origin [INFO ] It is highly recommended to configure Git before using DataLad. Set both 'user.name' and 'user.email' configuration variables. [INFO ] Remote origin does not have git-annex installed; setting annex-ignore | This could be a problem with the git-annex installation on the remote. Please make sure that git-annex-shell is available in PATH when you ssh into the remote. Once you have fixed the git-annex installation, run: git annex enableremote origin [INFO ] Reset branch 'main' to 5a130c0d (from cf6893ca) to avoid a detached HEAD install(ok): /Users/julien/data/cneuromod/movie10 (dataset) install(error): /Users/julien/data/cneuromod/anat/.heudiconv (dataset) [Failed to clone from any candidate source URL. Encountered errors per each url were: - git@github.com:courtois-neuromod/anat.git/.heudiconv CommandError: 'git -c diff.ignoreSubmodules=none clone --progress git@github.com:courtois-neuromod/anat.git/.heudiconv /Users/julien/data/cneuromod/anat/.heudiconv' failed with exitcode 128 [err: 'Cloning into '/Users/julien/data/cneuromod/anat/.heudiconv'... It is highly recommended to configure Git before using DataLad. Set both 'user.name' and 'user.email' configuration variables. fatal: remote error: courtois-neuromod/anat.git/.heudiconv is not a valid repository name Visit https://support.github.com/ for help CommandError: 'ssh -o ControlPath=/Users/julien/Library/Caches/datalad/sockets/59df73ee -o SendEnv=GIT_PROTOCOL git@github.com 'git-upload-pack '"'"'courtois-neuromod/anat.git/.heudiconv'"'"''' failed with exitcode 1']] install(error): /Users/julien/data/cneuromod/friends/sourcedata (dataset) [Failed to clone from any candidate source URL. Encountered errors per each url were: - git@github.com:courtois-neuromod/friends.git/sourcedata CommandError: 'git -c diff.ignoreSubmodules=none clone --progress git@github.com:courtois-neuromod/friends.git/sourcedata /Users/julien/data/cneuromod/friends/sourcedata' failed with exitcode 128 [err: 'Cloning into '/Users/julien/data/cneuromod/friends/sourcedata'... It is highly recommended to configure Git before using DataLad. Set both 'user.name' and 'user.email' configuration variables. fatal: remote error: courtois-neuromod/friends.git/sourcedata is not a valid repository name Visit https://support.github.com/ for help CommandError: 'ssh -o ControlPath=/Users/julien/Library/Caches/datalad/sockets/59df73ee -o SendEnv=GIT_PROTOCOL git@github.com 'git-upload-pack '"'"'courtois-neuromod/friends.git/sourcedata'"'"''' failed with exitcode 1']] [INFO ] Unable to parse git config from origin [INFO ] It is highly recommended to configure Git before using DataLad. Set both 'user.name' and 'user.email' configuration variables. [INFO ] Remote origin does not have git-annex installed; setting annex-ignore [INFO ] This could be a problem with the git-annex installation on the remote. Please make sure that git-annex-shell is available in PATH when you ssh into the remote. Once you have fixed the git-annex installation, run: git annex enableremote origin [INFO ] It is highly recommended to configure Git before using DataLad. Set both 'user.name' and 'user.email' configuration variables. [INFO ] It is highly recommended to configure Git before using DataLad. Set both 'user.name' and 'user.email' configuration variables. [INFO ] RIA store unavailable. -caused by- file:///data/neuromod/ria-sequoia/ria-layout-version not found. -caused by- [Errno 2] No such file or directory: '/data/neuromod/ria-sequoia/ria-layout-version' [INFO ] It is highly recommended to configure Git before using DataLad. Set both 'user.name' and 'user.email' configuration variables. [INFO ] It is highly recommended to configure Git before using DataLad. Set both 'user.name' and 'user.email' configuration variables. Installing (5 skipped, 2 failed): 67%|████████████████████████████████████████████████████████████ | 8.00/12.0 [00:18<00:00, 12.2 datasets/s] ```

i'll set up my user.name' and 'user.email to see if it helps

jcohenadad commented 1 year ago

possibly related to https://github.com/courtois-neuromod/cneuromod_docs/issues/68

jcohenadad commented 1 year ago

hum, after setting user.name/email, if completes with errors:

Terminal output ```console julien-macbook:~/data $ datalad install -r git@github.com:courtois-neuromod/cneuromod.git [INFO ] Ensuring presence of Dataset(/Users/julien/data/cneuromod) to get /Users/julien/data/cneuromod install(error): /Users/julien/data/cneuromod/anat/.heudiconv (dataset) [Failed to clone from any candidate source URL. Encountered errors per each url were: - git@github.com:courtois-neuromod/anat.git/.heudiconv CommandError: 'git -c diff.ignoreSubmodules=none clone --progress git@github.com:courtois-neuromod/anat.git/.heudiconv /Users/julien/data/cneuromod/anat/.heudiconv' failed with exitcode 128 [err: 'Cloning into '/Users/julien/data/cneuromod/anat/.heudiconv'... fatal: remote error: courtois-neuromod/anat.git/.heudiconv is not a valid repository name Visit https://support.github.com/ for help CommandError: 'ssh -o ControlPath=/Users/julien/Library/Caches/datalad/sockets/59df73ee -o SendEnv=GIT_PROTOCOL git@github.com 'git-upload-pack '"'"'courtois-neuromod/anat.git/.heudiconv'"'"''' failed with exitcode 1']] install(error): /Users/julien/data/cneuromod/friends/sourcedata (dataset) [Failed to clone from any candidate source URL. Encountered errors per each url were: - git@github.com:courtois-neuromod/friends.git/sourcedata CommandError: 'git -c diff.ignoreSubmodules=none clone --progress git@github.com:courtois-neuromod/friends.git/sourcedata /Users/julien/data/cneuromod/friends/sourcedata' failed with exitcode 128 [err: 'Cloning into '/Users/julien/data/cneuromod/friends/sourcedata'... fatal: remote error: courtois-neuromod/friends.git/sourcedata is not a valid repository name Visit https://support.github.com/ for help CommandError: 'ssh -o ControlPath=/Users/julien/Library/Caches/datalad/sockets/59df73ee -o SendEnv=GIT_PROTOCOL git@github.com 'git-upload-pack '"'"'courtois-neuromod/friends.git/sourcedata'"'"''' failed with exitcode 1']] install(error): /Users/julien/data/cneuromod/hcptrt/stimuli (dataset) [Failed to clone from any candidate source URL. Encountered errors per each url were: - git@github.com:courtois-neuromod/hcptrt.git/stimuli CommandError: 'git -c diff.ignoreSubmodules=none clone --progress git@github.com:courtois-neuromod/hcptrt.git/stimuli /Users/julien/data/cneuromod/hcptrt/stimuli' failed with exitcode 128 [err: 'Cloning into '/Users/julien/data/cneuromod/hcptrt/stimuli'... fatal: remote error: courtois-neuromod/hcptrt.git/stimuli is not a valid repository name Visit https://support.github.com/ for help CommandError: 'ssh -o ControlPath=/Users/julien/Library/Caches/datalad/sockets/59df73ee -o SendEnv=GIT_PROTOCOL git@github.com 'git-upload-pack '"'"'courtois-neuromod/hcptrt.git/stimuli'"'"''' failed with exitcode 1']] install(error): /Users/julien/data/cneuromod/movie10/sourcedata (dataset) [Failed to clone from any candidate source URL. Encountered errors per each url were: - git@github.com:courtois-neuromod/movie10.git/sourcedata CommandError: 'git -c diff.ignoreSubmodules=none clone --progress git@github.com:courtois-neuromod/movie10.git/sourcedata /Users/julien/data/cneuromod/movie10/sourcedata' failed with exitcode 128 [err: 'Cloning into '/Users/julien/data/cneuromod/movie10/sourcedata'... fatal: remote error: courtois-neuromod/movie10.git/sourcedata is not a valid repository name Visit https://support.github.com/ for help CommandError: 'ssh -o ControlPath=/Users/julien/Library/Caches/datalad/sockets/59df73ee -o SendEnv=GIT_PROTOCOL git@github.com 'git-upload-pack '"'"'courtois-neuromod/movie10.git/sourcedata'"'"''' failed with exitcode 1']] [INFO ] Unable to parse git config from origin [INFO ] Remote origin does not have git-annex installed; setting annex-ignore | This could be a problem with the git-annex installation on the remote. Please make sure that git-annex-shell is available in PATH when you ssh into the remote. Once you have fixed the git-annex installation, run: git annex enableremote origin install(ok): /Users/julien/data/cneuromod/movie10/stimuli (dataset) action summary: install (error: 4, notneeded: 1, ok: 1) ```
jcohenadad commented 1 year ago

i can get the anat data, so i'll just ignore the errors 🤷‍♂️

jcohenadad commented 1 year ago

actually, i am not able to download some of the data. Details:

Terminal output ```console julien-macbook:~/data/cneuromod/anat $ datalad get -r sub-01/ses-001 [INFO ] Ensuring presence of Dataset(/Users/julien/data/cneuromod/anat) to get /Users/julien/data/cneuromod/anat/sub-01/ses-001 get(ok): sub-01/ses-001/anat/sub-01_ses-001_T1w.nii.gz (file) [from cneuromod.anat.mri...] get(ok): sub-01/ses-001/anat/sub-01_ses-001_T2w.nii.gz (file) [from cneuromod.anat.mri...] get(ok): sub-01/ses-001/anat/sub-01_ses-001_UNIT1.nii.gz (file) [from cneuromod.anat.mri...] get(error): sub-01/ses-001/anat/sub-01_ses-001_acq-axial_localizer.nii.gz (file) [not available; (Note that these git remotes have annex-ignore set: origin)] get(error): sub-01/ses-001/anat/sub-01_ses-001_acq-coronal_bp-cspine_localizer.nii.gz (file) [not available; (Note that these git remotes have annex-ignore set: origin)] get(error): sub-01/ses-001/anat/sub-01_ses-001_acq-coronal_localizer.nii.gz (file) [not available; (Note that these git remotes have annex-ignore set: origin)] get(error): sub-01/ses-001/anat/sub-01_ses-001_acq-sagittal_bp-cspine_localizer.nii.gz (file) [not available; (Note that these git remotes have annex-ignore set: origin)] get(error): sub-01/ses-001/anat/sub-01_ses-001_acq-sagittal_localizer.nii.gz (file) [not available; (Note that these git remotes have annex-ignore set: origin)] get(ok): sub-01/ses-001/anat/sub-01_ses-001_bp-cspine_T2starw.nii.gz (file) [from cneuromod.anat.mri...] get(ok): sub-01/ses-001/anat/sub-01_ses-001_bp-cspine_T2w.nii.gz (file) [from cneuromod.anat.mri...] get(error): sub-01/ses-001/anat/sub-01_ses-001_bp-cspine_flip-1_mt-off_MTS.nii.gz (file) [not available; (Note that these git remotes have annex-ignore set: origin)] get(error): sub-01/ses-001/anat/sub-01_ses-001_bp-cspine_flip-1_mt-on_MTS.nii.gz (file) [not available; (Note that these git remotes have annex-ignore set: origin)] get(error): sub-01/ses-001/anat/sub-01_ses-001_bp-cspine_flip-2_mt-off_MTS.nii.gz (file) [not available; (Note that these git remotes have annex-ignore set: origin)] get(error): sub-01/ses-001/anat/sub-01_ses-001_flip-1_mt-off_MTS.nii.gz (file) [not available; (Note that these git remotes have annex-ignore set: origin)] get(error): sub-01/ses-001/anat/sub-01_ses-001_flip-1_mt-on_MTS.nii.gz (file) [not available; (Note that these git remotes have annex-ignore set: origin)] get(error): sub-01/ses-001/anat/sub-01_ses-001_flip-2_mt-off_MTS.nii.gz (file) [not available; (Note that these git remotes have annex-ignore set: origin)] get(ok): sub-01/ses-001/anat/sub-01_ses-001_inv-1_MP2RAGE.nii.gz (file) [from cneuromod.anat.mri...] get(ok): sub-01/ses-001/anat/sub-01_ses-001_inv-2_MP2RAGE.nii.gz (file) [from cneuromod.anat.mri...] get(ok): sub-01/ses-001/anat/sub-01_ses-001_rec-dis2d_UNIT1.nii.gz (file) [from cneuromod.anat.mri...] get(error): sub-01/ses-001/anat/sub-01_ses-001_rec-dis2d_flip-1_mt-off_MTS.nii.gz (file) [not available; (Note that these git remotes have annex-ignore set: origin)] get(error): sub-01/ses-001/anat/sub-01_ses-001_rec-dis2d_flip-1_mt-on_MTS.nii.gz (file) [not available; (Note that these git remotes have annex-ignore set: origin)] get(error): sub-01/ses-001/anat/sub-01_ses-001_rec-dis2d_flip-2_mt-off_MTS.nii.gz (file) [not available; (Note that these git remotes have annex-ignore set: origin)] get(ok): sub-01/ses-001/anat/sub-01_ses-001_rec-dis2d_inv-1_MP2RAGE.nii.gz (file) [from cneuromod.anat.mri...] get(ok): sub-01/ses-001/anat/sub-01_ses-001_rec-dis2d_inv-2_MP2RAGE.nii.gz (file) [from cneuromod.anat.mri...] get(ok): sub-01/ses-001/anat/sub-01_ses-001_rec-norm_T1w.nii.gz (file) [from cneuromod.anat.mri...] get(ok): sub-01/ses-001/anat/sub-01_ses-001_rec-norm_T2w.nii.gz (file) [from cneuromod.anat.mri...] get(ok): sub-01/ses-001/anat/sub-01_ses-001_rec-norm_mod-T1w_defacemask.nii.gz (file) [from cneuromod.anat.mri...] get(ok): sub-01/ses-001/dwi/sub-01_ses-001_dir-AP_bp-cspine_dwi.nii.gz (file) [from cneuromod.anat.mri...] get(ok): sub-01/ses-001/dwi/sub-01_ses-001_dir-AP_dwi.nii.gz (file) [from cneuromod.anat.mri...] get(ok): sub-01/ses-001/dwi/sub-01_ses-001_dir-AP_sbref.nii.gz (file) [from cneuromod.anat.mri...] get(ok): sub-01/ses-001/dwi/sub-01_ses-001_dir-PA_dwi.nii.gz (file) [from cneuromod.anat.mri...] get(ok): sub-01/ses-001/dwi/sub-01_ses-001_dir-PA_sbref.nii.gz (file) [from cneuromod.anat.mri...] [4 similar messages have been suppressed; disable with datalad.ui.suppress-similar-results=off] get(error): sub-01/ses-001/sub-01_ses-001_scans.tsv (file) [not available; (Note that these git remotes have annex-ignore set: origin)] get(impossible): sub-01/ses-001 (directory) [could not get some content in /Users/julien/data/cneuromod/anat/sub-01/ses-001 ['/Users/julien/data/cneuromod/anat/sub-01/ses-001/anat/sub-01_ses-001_acq-axial_localizer.nii.gz', '/Users/julien/data/cneuromod/anat/sub-01/ses-001/anat/sub-01_ses-001_acq-coronal_bp-cspine_localizer.nii.gz', '/Users/julien/data/cneuromod/anat/sub-01/ses-001/anat/sub-01_ses-001_acq-coronal_localizer.nii.gz', '/Users/julien/data/cneuromod/anat/sub-01/ses-001/anat/sub-01_ses-001_acq-sagittal_bp-cspine_localizer.nii.gz', '/Users/julien/data/cneuromod/anat/sub-01/ses-001/anat/sub-01_ses-001_acq-sagittal_localizer.nii.gz', '/Users/julien/data/cneuromod/anat/sub-01/ses-001/anat/sub-01_ses-001_bp-cspine_flip-1_mt-off_MTS.nii.gz', '/Users/julien/data/cneuromod/anat/sub-01/ses-001/anat/sub-01_ses-001_bp-cspine_flip-1_mt-on_MTS.nii.gz', '/Users/julien/data/cneuromod/anat/sub-01/ses-001/anat/sub-01_ses-001_bp-cspine_flip-2_mt-off_MTS.nii.gz', '/Users/julien/data/cneuromod/anat/sub-01/ses-001/anat/sub-01_ses-001_flip-1_mt-off_MTS.nii.gz', '/Users/julien/data/cneuromod/anat/sub-01/ses-001/anat/sub-01_ses-001_flip-1_mt-on_MTS.nii.gz', '/Users/julien/data/cneuromod/anat/sub-01/ses-001/anat/sub-01_ses-001_flip-2_mt-off_MTS.nii.gz', '/Users/julien/data/cneuromod/anat/sub-01/ses-001/anat/sub-01_ses-001_rec-dis2d_flip-1_mt-off_MTS.nii.gz', '/Users/julien/data/cneuromod/anat/sub-01/ses-001/anat/sub-01_ses-001_rec-dis2d_flip-1_mt-on_MTS.nii.gz', '/Users/julien/data/cneuromod/anat/sub-01/ses-001/anat/sub-01_ses-001_rec-dis2d_flip-2_mt-off_MTS.nii.gz', '/Users/julien/data/cneuromod/anat/sub-01/ses-001/sub-01_ses-001_scans.tsv']] action summary: get (error: 15, impossible: 1, ok: 22) ```
jcohenadad commented 1 year ago

@bpinsard @mathieuboudreau do you know about this issue?

jcohenadad commented 1 year ago

ah! duplicate of https://github.com/courtois-neuromod/cneuromod_docs/issues/69

so i'm closing this issue and follow up on the other one (which was closed, but maybe shouldn't have)