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"s" (lower case) in original json "sites" field #17

Closed jaquol closed 3 years ago

jaquol commented 3 years ago

Trying to parse the "sites" field of the json files here:

https://github.com/cov-lineages/constellations/tree/main/constellations/definitions

I found several cases where there should be a "S" (upper case) instead of "s" (lower case) for consistency across mutations (see table below).

Just reporting in case it is useful for you.

sites Pango_lineages sites_converted_for_type_variants
s:A570D B.1.1.7 aa:S:A570D
s:D1118H B.1.1.7 aa:S:D1118H
s:D1139H AV.1 aa:S:D1139H
s:D614G AV.1 aa:S:D614G
s:D80G AV.1 aa:S:D80G
s:E484K AV.1 aa:S:E484K
s:G142D AV.1 aa:S:G142D
s:HV69- B.1.1.7 aa:S:HV69-
s:I1130V AV.1 aa:S:I1130V
s:N439K AV.1 aa:S:N439K
s:N501Y B.1.1.7 aa:S:N501Y
s:P681H AV.1 aa:S:P681H
s:P681H B.1.1.7 aa:S:P681H
s:S982A B.1.1.7 aa:S:S982A
s:T716I B.1.1.7 aa:S:T716I
s:T95I AV.1 aa:S:T95I
s:Y144- AV.1 aa:S:Y144-
s:Y144- B.1.1.7 aa:S:Y144-
rmcolq commented 3 years ago

I thought type_variants was case insensitive? Is that not the case?