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warnings/errors when using certain json with scorpio #3

Closed mcroxen closed 3 years ago

mcroxen commented 3 years ago

found these warnings when using the various .json files with scorpio:

Parsing constellation JSON file ./constellations/constellations/definitions/cA.23.1+E484K.json
variants file says reference amino acid in CDS orf1a at position 741 is L, but reference sequence has F

Parsing constellation JSON file ./constellations/constellations/definitions/cB.1.1.318.json
variants file says reference amino acid in CDS orf1a at position 1693 is K, but reference sequence has P

Parsing constellation JSON file ./constellations/constellations/definitions/cB.1.324.1.json
variants file says reference amino acid in CDS orf1a at position 76 is G, but reference sequence has A

Parsing constellation JSON file ./constellations/constellations/definitions/cB.1.525.json
variants file says reference amino acid in CDS orf1a at position 323 is P, but reference sequence has C

Parsing constellation JSON file ./constellations/constellations/definitions/cB.1.617.1.json
variants file says reference amino acid in CDS orf1a at position 77 is T, but reference sequence has R

Parsing constellation JSON file ./constellations/constellations/definitions/cB.1.617.3.json
variants file says reference amino acid in CDS orf1a at position 1526 is A, but reference sequence has E

Parsing constellation JSON file ./constellations/constellations/definitions/cP.3.json
variants file says reference amino acid in CDS orf1a at position 736 is D, but reference sequence has P
rmcolq commented 3 years ago

Please update your environment with the latest version of scorpio and constellations. New releases of constellations version v0.0.2 and scorpio version v0.3 should fix this