Remove nuc:C241T - this is in the masked out region of 5' UTR and is always ambiguous in Pangolin alignments
Add spike:Y505H - was being called for reference in some early genomes but seems fixed in Omicron
Remove deletions, del:6513:3 and del:11283:9 ? Deletions are always called badly and the exact positions can be difficult to fix.
Remove
nuc:C241T
- this is in the masked out region of 5' UTR and is always ambiguous in Pangolin alignments Addspike:Y505H
- was being called for reference in some early genomes but seems fixed in OmicronRemove deletions,
del:6513:3
anddel:11283:9
? Deletions are always called badly and the exact positions can be difficult to fix.