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cov-lineages / constellations

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Modifications to B.1.1.529 (Omicron) definition #41

Closed rambaut closed 2 years ago

rambaut commented 2 years ago

Remove nuc:C241T - this is in the masked out region of 5' UTR and is always ambiguous in Pangolin alignments Add spike:Y505H - was being called for reference in some early genomes but seems fixed in Omicron

Remove deletions, del:6513:3 and del:11283:9 ? Deletions are always called badly and the exact positions can be difficult to fix.

rmcolq commented 2 years ago

Do we want to expand the omicron or omicron (probable) while we are at it to make sure it captures those 2 outliers?