https://cov-lineages.org/lineage_list.html --> no lineages displayed

[AKWB]

Hi there,

is this issue connected to one of the others, listed here? I do not see any lineages listed.

Greets

[rmcolq]

Yes, same issue - I'm working on a fix

[AKWB]

would it be possible to provide a simple tsv-file (as in early days) with the same data normally displayed on the webpage? This would at least allow us to continue annotation of lineages in our reporting.

[rmcolq]

The information that is loaded into that table is available in JSON format here https://github.com/cov-lineages/lineages-website/blob/master/_data/lineage_data.json (or if that file is too large for you, the same info is currently spread equally into 5 files with the names https://github.com/cov-lineages/lineages-website/blob/master/_data/lineage_data_X.json). Feel free to parse them instead

[AKWB]

For those who might need it as well:

import pandas as pd

pdObj = pd.read_json('lineage_data.json', orient='index') pdObj.to_csv('lineageData.csv', columns=["Lineage","Countries","Earliest date","Number designated","Number Assigned","Description"], index=False)

[rmcolq]

OK, this page is now live again although it has now been filtered to only those lineages which have been seen globally in the last year.

Note for future me:

• git-lfs doesn't support github-pages
• tried chunking up the JSON. This might work with better javascript, but in my test case did not.

[AKWB]

do you have somewhere still the BIG json file? As we are reprocessing all our samples with anew pangolin update, including all lineages...I think I saw somewhere a file > 100MB (?)

[aineniamh]

We could theoretically push the large file to git-lfs and provide a link to the website, even if it won't be able to be rendered on the website

[rmcolq]

The original file has been pushed back to the LFS https://github.com/cov-lineages/lineages-website/blob/master/_data/lineage_data.full.json