Closed FedeGueli closed 1 year ago
This lineage seems to be a sublineage of https://github.com/cov-lineages/pango-designation/issues/1471
This lineage seems to be a sublineage of #1471
thx for noticing i will wait for the decision of @corneliusroemer and @InfrPopGen if designate or not 1471 from T17208C.
30 sequences now, big upload from Singapore this evening
36 as today, its designation should be happen ONLY after a decision will be taken on #1471
this is the bigger sublineage of #1471 now at 71 sequences. It should be designated just after the parent.
This is the biggest sublineage of the recently designated BA.5.2.48 dominating in China, accounting for nearly half of the sequences assigned to the parental lineage.
@InfrPopGen @thomasppeacock @corneliusroemer
175 now, Italy and New Zealand.
Italy EPI_ISL_16431224. EPI_ISL_16431225 New Zealand EPI_ISL_16436171
Travel history unknown, are they locally transmitted?
With the last upload from Shandong this represents around half of BA.5.2.48 sequences
Confirmed in wastewater. This mutation has been detected most prevalent (77 out of 88 samples, detection threshold at >100 reads) in wastewater samples collected in the recent two months in southern China. We've been monitoring novel mutations that have not been assigned to any lineages, the most prevalent nuc mutations with >50% in wastewater samples are: C28994A(0.875), C5628T(0.864), A28370T(0.807), C16887T(0.727), G21987A(0.557), T26773C(0.534).
2233 seqs as today
Yep, this is a clear one to designated. Will assign myself
This lineage was spotted first by Yunlong Richard Cao,
Defining mutations :
BA.5.2 ( > C27513T > C27012T > G12310A > C16616A (Orf1b:1050N)) then C2710T > C8626T > C11824T > T17208C > N:Q241K (C28994A )
Tree: https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice2_genome_1acf9_b0ad20.json?c=userOrOld&label=id:node_7080113
Gisaid Query: N_Q241K,NSP13_T127N,M_D3N
Sequences : 18
EPI_ISL_16259462, EPI_ISL_16259469, EPI_ISL_16259474, EPI_ISL_16259481, EPI_ISL_16259506, EPI_ISL_16283958, EPI_ISL_16283962, EPI_ISL_16283966, EPI_ISL_16283969, EPI_ISL_16283971, EPI_ISL_16283985-16283987, EPI_ISL_16283993, EPI_ISL_16284002-16284003, EPI_ISL_16284007, EPI_ISL_16286992,