XBB.1.5 with S:P251S (134 seq., 8 countries)

[agamedilab]

Proposal for a sublineage of XBB.1.5 Earliest sequence: 24.12.2022 (USA) Countries detected: USA, Irland, Scotland, England, Austria

Defining mutations: S:P251S = C22313T

Gisaid query: A20118G, C22313T, G28079T

https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_17593_663d70.json?label=id:node_7650674

EPI_ISL_16579224, EPI_ISL_16734149, EPI_ISL_16734176, EPI_ISL_16754452, EPI_ISL_16754582, EPI_ISL_16904571, EPI_ISL_16908137, EPI_ISL_16998382, EPI_ISL_16998386, EPI_ISL_16998387, EPI_ISL_16998388, EPI_ISL_16998389, EPI_ISL_16998390, EPI_ISL_16998391, EPI_ISL_16998392, EPI_ISL_16998393, EPI_ISL_16998394, EPI_ISL_16998398, EPI_ISL_16998399, EPI_ISL_16998400, EPI_ISL_16998401, EPI_ISL_16998402, EPI_ISL_16998408, EPI_ISL_16998409, EPI_ISL_16998419, EPI_ISL_16998426

OQ420254.1, OX427154.1, OX427437.1, OX427709.1, OX430833.1

[FedeGueli]

I was just highlighting it in the XBB.1.5 spike diversity. tracked there since a while. #1510

[agamedilab]

47 seq as of 01.03.23.

https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_3c8a3_efdba0.json?c=country&label=id:node_7684955

[agamedilab]

96 on usher as of 09.03.23.

https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_8263_9cdcb0.json?c=gt-S_251&label=id:node_7705792

[agamedilab]

134 as of 20.03.23.

https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_3195a_809990.json?c=country&label=id:node_7770565

[FedeGueli]

Designated EK.3 from https://github.com/cov-lineages/pango-designation/commit/cb295223b59a842d7b010c25ed415792bb0adc5c

[agamedilab]

I would be very happy if a designated label and milestone could be added to the issue! Many thanks! @corneliusroemer @InfrPopGen

[agamedilab]

many thanks! @corneliusroemer