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XBB.1 with S:H146K (166 seq., 37 countries) #1703

Closed agamedilab closed 1 year ago

agamedilab commented 1 year ago

Proposal for a sublineage of XBB.1 Earliest sequence: 27.09.2022 (Bangladesh) Countries detected: England, Israel, Denmark, South Africa, Iceland, France, Luxembourg, Ireland, Bangladesh, Indonesia, Malaysia, SouthKorea, Portugal, Russia, Brunei, USA, Japan, Singapore, Germany, Sweden, FrenchGuiana, Brazil, Guatemala, India, CostaRica, Italy, Greece, Netherlands, Ecuador, Australia, Chile, Mexico, Lithuania, Uganda, Bahrain, Switzerland, Wales

Defining mutations: S:H146K = C21998A, C22000A

This subvariant of XBB.1 is defined by S:H146K and was detected in c. 37 countries so far. It lacks S:L216F, S:N148T, S:F486P and is therefore apparently distinct from the lineages proposed in #1428, #1529, #1503 respectively.

grafik

grafik https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_15d95_da9310.json?c=gt-S_146

EPI_ISL_15615980, EPI_ISL_15634733, EPI_ISL_15634815, EPI_ISL_15722254, EPI_ISL_15726756, EPI_ISL_15740717, EPI_ISL_15777145, EPI_ISL_15808277, EPI_ISL_15808290, EPI_ISL_15813322, EPI_ISL_15839035, EPI_ISL_15839215, EPI_ISL_15913018, EPI_ISL_15929945, EPI_ISL_15940122, EPI_ISL_15940254, EPI_ISL_15952812, EPI_ISL_15968481, EPI_ISL_15980339, EPI_ISL_15980610, EPI_ISL_15982614, EPI_ISL_16006852, EPI_ISL_16008385, EPI_ISL_16008559, EPI_ISL_16017751, EPI_ISL_16029549, EPI_ISL_16053118, EPI_ISL_16062534, EPI_ISL_16063747, EPI_ISL_16098149, EPI_ISL_16098172, EPI_ISL_16110211, EPI_ISL_16151127, EPI_ISL_16151147, EPI_ISL_16151195, EPI_ISL_16151205, EPI_ISL_16151209, EPI_ISL_16167145, EPI_ISL_16171745, EPI_ISL_16175139, EPI_ISL_16180394, EPI_ISL_16181641, EPI_ISL_16191672, EPI_ISL_16221381, EPI_ISL_16250784, EPI_ISL_16259349, EPI_ISL_16291829, EPI_ISL_16295708, EPI_ISL_16297882, EPI_ISL_16305386, EPI_ISL_16320992, EPI_ISL_16320994, EPI_ISL_16345960, EPI_ISL_16347265, EPI_ISL_16354209, EPI_ISL_16374899, EPI_ISL_16383129, EPI_ISL_16402698, EPI_ISL_16405706, EPI_ISL_16407938, EPI_ISL_16437064, EPI_ISL_16437065, EPI_ISL_16445606, EPI_ISL_16446128, EPI_ISL_16449190, EPI_ISL_16510194, EPI_ISL_16510600, EPI_ISL_16510781, EPI_ISL_16514597, EPI_ISL_16517851, EPI_ISL_16528263, EPI_ISL_16533076, EPI_ISL_16533417, EPI_ISL_16537917, EPI_ISL_16538040, EPI_ISL_16538049, EPI_ISL_16538153, EPI_ISL_16538154, EPI_ISL_16538257, EPI_ISL_16538519, EPI_ISL_16538527, EPI_ISL_16538662, EPI_ISL_16538761, EPI_ISL_16538773, EPI_ISL_16538774, EPI_ISL_16579109, EPI_ISL_16601348, EPI_ISL_16608539, EPI_ISL_16608576, EPI_ISL_16618520, EPI_ISL_16618731, EPI_ISL_16639527, EPI_ISL_16640774, EPI_ISL_16643567, EPI_ISL_16650153, EPI_ISL_16700158, EPI_ISL_16712594, EPI_ISL_16733666, EPI_ISL_16739852, EPI_ISL_16744517, EPI_ISL_16759707, EPI_ISL_16763833, EPI_ISL_16852749, EPI_ISL_16858978, EPI_ISL_16859157, EPI_ISL_16859168, EPI_ISL_16859232, EPI_ISL_16861727, EPI_ISL_16895858, EPI_ISL_16910007, EPI_ISL_16910297, EPI_ISL_16920154, EPI_ISL_16963628, EPI_ISL_16963666, EPI_ISL_16966772, EPI_ISL_16982245, EPI_ISL_16984568, EPI_ISL_16994831, EPI_ISL_16994832, EPI_ISL_17039469, EPI_ISL_17039471

OP889370.1, OP889398.1, OP889422.1, OP889433.1, OP889494.1, OP889499.1, OP889750.1, OP993473.1, OQ151489.1, OQ238576.1, OQ264623.1, OQ361582.1, OQ369276.1, OQ370429.1, OQ399451.1, OQ399502.1, OQ435977.1, OQ438437.1, OX375485.1, OX390649.1, OX394785.1, OX396656.1, OX397310.1, OX398933.1, OX399008.1, OX400477.1, OX400829.1, OX401019.1, OX402416.1, OX402645.1, OX403217.1, OX403310.1, OX420114.1, OX424316.1

agamedilab commented 1 year ago

197 seq. Can be closed for the time.

grafik https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_149b9_bca2c0.json?label=id:node_5829748