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Repository for suggesting new lineages that should be added to the current scheme
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XBB.1.16.2 sublineage with S:D178N (G22094A) (25 seqs in Canada) #1920

Closed HynnSpylor closed 4 months ago

HynnSpylor commented 1 year ago

Defining mutations: XBB.1.16>>G25429C (ORF3a:V13L) >C3042A (ORF1a:P926H)> C11962A>C8140T>G22094A(S:D178N) GISAID query: Spike_E180V, Spike_D178N, T28297C, C8140T Earliest seq: 2023-03-26 (Canada, EPI_ISL_17442164) Most recent seq: 2023-04-10 (Canada, EPI_ISL_17491053) Countries detected: Canada (25) Usher Tree: QQ截图20230420091518

https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_339e2_8fbe0.json

This sublineage is growing recently in Canada. Of course, the current growth advantage is uncertain (Cov-spectrum shows more than 500% to XBB.1.16), but the potential is worth monitoring.

Genomes: EPI_ISL_17442164, EPI_ISL_17442566, EPI_ISL_17442850, EPI_ISL_17442852, EPI_ISL_17442857-17442858, EPI_ISL_17442860-17442861, EPI_ISL_17442869, EPI_ISL_17442881, EPI_ISL_17490801, EPI_ISL_17490807, EPI_ISL_17490811-17490812, EPI_ISL_17490825, EPI_ISL_17490831, EPI_ISL_17490846, EPI_ISL_17490854, EPI_ISL_17491048, EPI_ISL_17491052-17491055, EPI_ISL_17491057, EPI_ISL_17491059

FedeGueli commented 1 year ago

@HynnSpylor there is a typo in defining mutations

Defining mutations: XBB.1.16>>G25429C (ORF3a:V13L) >C3042A (ORF1a:P926H)> C11962A>C8140T>G22094A(S:N178D)

corneliusroemer commented 1 year ago

Parent lineage is now XBB.1.16.2

Memorablea commented 1 year ago

29 NOW

DailyCovidCases commented 4 months ago

Please close this issue