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cov-lineages / pango-designation

Repository for suggesting new lineages that should be added to the current scheme
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FY.1 (XBB.1.22.1.1) sublineage with S:T572I and ORF1b:P218L (71 seqs in 10 conturies) #2017

Closed HynnSpylor closed 1 year ago

HynnSpylor commented 1 year ago

Defining mutations: FY.1>C11575T, C14120T (ORF1b:P218L), C23277T (S:T572I) GISAID query: A22161G, C23277T, C11575T, C14120T Earliest seq: 2023-02-08 (Israel, EPI_ISL_16996211) Most recent seq: 2023-05-11 (Sweden, EPI_ISL_17699886) Countries detected: Israel (12), UK (4, including England 3/Scotland 1), Germany (3), France (2), Netherlands (2), Spain (2), Sweden (2), USA (2), Finland (1), Ireland (1)

Usher Tree: QQ截图20230524222427 https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_904d_e18620.json

A long-time transmission sublineage which likely emerged in Israel. It has slight advantage to its parent lineage (FY.1) QQ截图20230524222325

https://cov-spectrum.org/explore/World/AllSamples/Past3M/variants?nextcladePangoLineage=FY.1*&aaMutations1=S%3AT572I%2CORF1b%3AP218L&nextcladePangoLineage1=FY.1*&analysisMode=CompareToBaseline&

Genomes: EPI_ISL_16996132, EPI_ISL_16996211, EPI_ISL_17208275, EPI_ISL_17241581, EPI_ISL_17241607, EPI_ISL_17241699, EPI_ISL_17418145, EPI_ISL_17468339, EPI_ISL_17483717, EPI_ISL_17540379, EPI_ISL_17558082, EPI_ISL_17558102, EPI_ISL_17558201, EPI_ISL_17558250, EPI_ISL_17558279, EPI_ISL_17613824, EPI_ISL_17613868, EPI_ISL_17622640, EPI_ISL_17622652, EPI_ISL_17622840, EPI_ISL_17630048, EPI_ISL_17667080, EPI_ISL_17674413, EPI_ISL_17676224, EPI_ISL_17676400, EPI_ISL_17679069, EPI_ISL_17680796, EPI_ISL_17685510, EPI_ISL_17699880, EPI_ISL_17699886, EPI_ISL_17705123

HynnSpylor commented 1 year ago

It is designated as FY.1.2 @corneliusroemer could you add the milestone and reference? Thx!

FedeGueli commented 1 year ago

Designated via https://github.com/cov-lineages/pango-designation/commit/8ccb7e4d63c011ca4f530d941fc70999d1f2bab9