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cov-lineages / pango-designation

Repository for suggesting new lineages that should be added to the current scheme
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Sudden Emergence of FR.1+9-nuc,3-aa including orf9b:G31R in China(56 seqs,5 countries) #2039

Closed aviczhl2 closed 1 year ago

aviczhl2 commented 1 year ago

Transferred from https://github.com/sars-cov-2-variants/lineage-proposals/issues/126

FR.1+C25572T+C337T+C882T(orf1a:A206V)+C14097T,C15017T(orf1b:A517V)+T28019C,C14599T,C25603T+G28374A(orf9b:G31R, N:G34E)

GISAID query: del28367_28375,T28019C,C14599T,C25603T

Note that the default for omicron is del28364_28372, and GISAID categorizes del28364_28372+G28374A to del28367_28375.

No. of seqs: 48( China 46(9 provinces , 2 from Singapore, 1 from Canada), Singapore 1(from Hong Kong) South Korea 1(from Hong Kong))

First seq: EPI_ISL_17645692, Sichuan, 4-1 Latest: EPI_ISL_17735959, Sichuan, 5-22

usher

image

aviczhl2 commented 1 year ago

56 and detected in Luxemberg.

aviczhl2 commented 1 year ago

This is FR.1.3 and shall add a label on it. @corneliusroemer

aviczhl2 commented 1 year ago

The label shall be FR.1.3

Over-There-Is commented 1 year ago

@corneliusroemer