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cov-lineages / pango-designation

Repository for suggesting new lineages that should be added to the current scheme
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XBB.1.5.94 +11-nuc,5-aa including S:478R (35 seqs, 14 countries) #2164

Closed xz-keg closed 11 months ago

xz-keg commented 1 year ago

From https://github.com/sars-cov-2-variants/lineage-proposals/issues/314

XBB.1.5.94+A8434G, A15426G + A2730T(orf1a:K822M), T3766C + C7086T(orf1a:T2274I)+T3460C, C11460A(orf1a:S3732Y, NSP6_S163Y), C15240T, A22995G(S:478R), A26915G, G28090A(orf8:G66D)

GISAID query: T3460C,C11460A,C15240T,C22995G,A26915G,G28090A

No. of seqs: 10( China 2 USA 1 South Korea 3 France 1 Italy 2 Canada 1)

First seq: EPI_ISL_17983658, South Korea, 2023-6-18 Latest seq: EPI_ISL_18067144, USA, 2023-7-27

usher

image

xz-keg commented 1 year ago

No new seqs of this for a long time.

xz-keg commented 1 year ago

There seems to be a re-emergence of this one. New country of Switzerland, Germany and Austria, Denmark. Total=21 now. New seqs of August and September.

FedeGueli commented 1 year ago

613H+487R seems trending up (8% over S:t478R only, but -12% against S:456L-478R combo )

here vs 478R+456L excluding FLip: Schermata 2023-10-01 alle 10 47 11 https://cov-spectrum.org/explore/World/AllSamples/Past3M/variants?aaMutations=S%3At478R%2CS%3A456L%2CS%3A455L&aaMutations1=S%3At478R%2CS%3AQ613H&analysisMode=CompareToBaseline&

xz-keg commented 1 year ago

25, Slovenia

xz-keg commented 1 year ago

31, Bulgaria

xz-keg commented 12 months ago

33, Norway,Australia

xz-keg commented 11 months ago

Vanish again.