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Repository for suggesting new lineages that should be added to the current scheme
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EG.5.1.3 with S:T732I (31 seqs, 8 countries) #2218

Closed NkRMnZr closed 12 months ago

NkRMnZr commented 1 year ago

Taken from Branch 2 of Multitask sars-cov-2-variants/lineage-proposals#519

Defining Mutations: EG.5.1.3 > C23757T(S:T732I) Query: C1889T, C22570T, C23757T Earliest seq: 2023-06-28 (EPI_ISL_17953331, Noord-Brabant, Netherlands) Latest seq: 2023-08-16 (EPI_ISL_18123412, Cataluña, Spain) Sampled Countries: France (14), Spain (6), Canada (5), Netherlands (2), Denmark (1), Israel (1), Italy (1), UK (1, England)

Genomes: `EPI_ISL_17953331, EPI_ISL_18048998-18048999, EPI_ISL_18070063, EPI_ISL_18070115, EPI_ISL_18070127, EPI_ISL_18070133, EPI_ISL_18074050, EPI_ISL_18094652, EPI_ISL_18094706, EPI_ISL_18094710, EPI_ISL_18094715, EPI_ISL_18098324, EPI_ISL_18112412, EPI_ISL_18114571, EPI_ISL_18114638, EPI_ISL_18114640, EPI_ISL_18114657, EPI_ISL_18115884, EPI_ISL_18118547, EPI_ISL_18118560-18118561, EPI_ISL_18118605, EPI_ISL_18118939, EPI_ISL_18123412, EPI_ISL_18124215-18124216, EPI_ISL_18124233, EPI_ISL_18124235, EPI_ISL_18135295, EPI_ISL_18135614`

UShER: https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_208f2_b2bdf0.json?f_userOrOld=uploaded%20sample&label=id:node_6929742 Branch2

FedeGueli commented 12 months ago

Designated JG.1 Milestone added to original issue to save Cornelius time. via https://github.com/cov-lineages/pango-designation/commit/98c5e92d56ac51b98730f8e042b320043ecf65cf