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cov-lineages / pango-designation

Repository for suggesting new lineages that should be added to the current scheme
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FL.10 saltation with ORF1a:G4178S, ORF1b:N1382S, S:K356T, S:T523N, ORF3a:D27N, ORF7b:N38I, N:K373N, N:D415E (14 seqs, Canada and USA) #2220

Closed NkRMnZr closed 12 months ago

NkRMnZr commented 1 year ago

transferred from sars-cov-2-variants/lineage-proposals#527

Defining Mutations: FL.10 > C18888T > T11422C, G12797A(ORF1a:G4178S/nsp9_G38S), A17612G(ORF1b:N1382S/nsp13_N459S), A22629C(S:K356T), C23130A(S:T523N), G25471A(ORF3a:D27N), A27868T(ORF7b:N38I), G29392C(N:K373N), C29518A(N:D415E) Query: A22629C, C23130A, G25471A Earliest seq: 2023-06-10 (EPI_ISL_17821379, Alberta, Canada) Latest seq: 2023-08-07 (EPI_ISL_18129707, Alberta, Canada) Sampled Countries: Canada (11: Alberta/6; Ontario/4; Saskatchewan/1), US (3: Washington/2; Iowa/1)

Genomes: `EPI_ISL_17821379, EPI_ISL_17994047, EPI_ISL_18030530, EPI_ISL_18040062, EPI_ISL_18055211, EPI_ISL_18062502, EPI_ISL_18105084, EPI_ISL_18111070, EPI_ISL_18115924, EPI_ISL_18121166, EPI_ISL_18129671, EPI_ISL_18129682, EPI_ISL_18129690, EPI_ISL_18129707`

Saltation Profile:

mutations on neatest neighboring branch:

nuc unique  G12797A, A17612G, C23130A, G25471A, A27868T, G29392C, C29518A
nuc homoplasies T11422C, A22629C
ORF1ab  unique  G4178S, N5783S
S   unique  T523N
S   homoplasies K356T
ORF3a   unique  D27N
ORF7b   unique  N38I
N   unique  K373N
N   homoplasies D415E

details mut

UShER: https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_2c3b8_b309b0.json?label=id:node_6974120 details

FedeGueli commented 12 months ago

Milestone missing. Please @AngieHinrichs and @corneliusroemer tell me if i have to add to issues in the preproposal page or not. i was doing that to save your time but i see that sometimes it has been added still here so. if i know what to do it will be great

AngieHinrichs commented 12 months ago

@corneliusroemer I defer cross-repo / milestone questions to you.

NkRMnZr commented 12 months ago

Designated via cov-lineages/pango-designation@a397154