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Repository for suggesting new lineages that should be added to the current scheme
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HS.1 (XBB.1.5.95+S:T478R) with S:F456L (25 seqs, USA) #2237

Closed NkRMnZr closed 12 months ago

NkRMnZr commented 12 months ago

Transferred from sars-cov-2-variants/lineage-proposals#633

Defining Mutations: HS.1 > T10084A > C6628T > C10252T, T22928C(S:F456L) > G28077T(ORF8:V62L) Query: C6628T, T10084A, T22928C Earliest seq: 2023-05-30 (EPI_ISL_17985957, Puerto Rico) Latest seq: 2023-08-17 (EPI_ISL_18164469, Texas) Sampled Countries: USA(14: Texas/14; Mississippi/6; New York/2; Puerto Rico/2; Delaware/1)

Genomes: `EPI_ISL_17856278, EPI_ISL_17985957, EPI_ISL_18057331, EPI_ISL_18057336, EPI_ISL_18057506, EPI_ISL_18059619, EPI_ISL_18099024, EPI_ISL_18099037, EPI_ISL_18104808, EPI_ISL_18104885, EPI_ISL_18107764, EPI_ISL_18110481, EPI_ISL_18110498, EPI_ISL_18110544, EPI_ISL_18119552, EPI_ISL_18119627, EPI_ISL_18119742, EPI_ISL_18126335, EPI_ISL_18137238, EPI_ISL_18160078, EPI_ISL_18162754, EPI_ISL_18163770, EPI_ISL_18163829, EPI_ISL_18164356, EPI_ISL_18164469`

UShER: https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_5140_1a6330.json?c=gt-S_478%2C456&gmax=25384&gmin=21563&label=id%3Anode_7279618

view from XBB.1.5.95 polytomy poly

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FedeGueli commented 12 months ago

Doubling (submission date) around 15 days.