Closed NkRMnZr closed 11 months ago
Being Orf8:A65V a known messy homoplasic mutation we could decide to start it deeper with Orf1a:T2906N cc @corneliusroemer @NkRMnZr
103 now , It is going fast in Singapore.
Tracking updates:
The S:A348S/G22604T
sub-branch exploded, phylogenetic order follows: Main proposal
> C8982A(ORF1a:T2906N), T19710C, C27213T
> G1067T(ORF1a:G268W)
> G22604T(S:A348S)
, query: G1067T, C8982A, G22604T
Thx @NkRMnZr good catch on 348S. I noticed two JG.3 in Singapore with S:A348 mutated too, we should monitor if it is nt a possible new pathway fro FLIP to evolve further.
About the growth of this one, it is in some long term care hospice in Canada lets see if it goes well outside that.
India not Singapore.
the 348S branch is doubling in 7 days well below the HK.3 & alike doubling time @corneliusroemer i suggest designation of this one
257 as today subbranch with S:A348S at 63. one of the fastest flip but slower than JG.3
Designated as three levels: HK.23, HK.23.1 and HK.23.1.1
Taken from Branch 15 of multitask sars-cov-2-variants/lineage-proposals#537
Defining Mutations:
EG.5.1.1
>C28087T(ORF8:A65V)
>G22927T(S:L455F)
, mostly with furtherC8982A(ORF1a:T2906N/nsp4_T143N), T19710C, C27213T
sub-branch Query:C6541T, G22927T, C28087T, -A4306G, -G4444A, -A6889G, -G8171A, -T8305C, -C10039T, -C19185T, -C25207T
ORC8982A, T19710C
if only count the majorORF1a:T2906N
sub-branchDefining Mutations for further S:A348S sub-branch:
Main proposal
>C8982A(ORF1a:T2906N), T19710C, C27213T
>G1067T(ORF1a:G268W)
>G22604T(S:A348S)
Query for further S:A348S sub-branch:G1067T, C8982A, G22604T
Earliest seq: 2023-08-10 (
EPI_ISL_18138246
, Shanghai) Latest seq: 2023-10-11 (EPI_ISL_18397348
, Singapore) Sampled Countries: Singapore (39), China (16: SH/6; SC/3; QH/2; HA; HB; HL; LN; SX), Japan (6), South Korea (5), Belgium (2), Canada (2: AB; ON), Australia (1: NSW), Austria (1), USA (1: AZ)Genomes:
`EPI_ISL_18138040, EPI_ISL_18138246, EPI_ISL_18208534, EPI_ISL_18213338, EPI_ISL_18243416, EPI_ISL_18284693, EPI_ISL_18284883, EPI_ISL_18284945, EPI_ISL_18285015, EPI_ISL_18285039, EPI_ISL_18289913, EPI_ISL_18292661, EPI_ISL_18312855, EPI_ISL_18313044, EPI_ISL_18313125, EPI_ISL_18313232, EPI_ISL_18320677, EPI_ISL_18320703, EPI_ISL_18324382, EPI_ISL_18324868, EPI_ISL_18346119, EPI_ISL_18354784, EPI_ISL_18354968, EPI_ISL_18354976, EPI_ISL_18355029, EPI_ISL_18361857, EPI_ISL_18361924, EPI_ISL_18361928, EPI_ISL_18361967, EPI_ISL_18362004, EPI_ISL_18362012, EPI_ISL_18362042, EPI_ISL_18362056, EPI_ISL_18362082, EPI_ISL_18372524, EPI_ISL_18376804, EPI_ISL_18376810, EPI_ISL_18376814, EPI_ISL_18376830, EPI_ISL_18376851, EPI_ISL_18376867, EPI_ISL_18376933, EPI_ISL_18379403, EPI_ISL_18382112, EPI_ISL_18382725, EPI_ISL_18384400, EPI_ISL_18385457, EPI_ISL_18385461, EPI_ISL_18397250, EPI_ISL_18397275, EPI_ISL_18397308, EPI_ISL_18397326, EPI_ISL_18397348, EPI_ISL_18397352, EPI_ISL_18397366, EPI_ISL_18397371, EPI_ISL_18397408, EPI_ISL_18397428, EPI_ISL_18397446, EPI_ISL_18397456, EPI_ISL_18397463, EPI_ISL_18397524, EPI_ISL_18397532, EPI_ISL_18397540, EPI_ISL_18397553, EPI_ISL_18397602, EPI_ISL_18397623, EPI_ISL_18402854, EPI_ISL_18406266, EPI_ISL_18408689, EPI_ISL_18409307, EPI_ISL_18411310, EPI_ISL_18411340`UShER: https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice1_genome_test_28cd5_2dbad0.json?f_userOrOld=uploaded%20sample&label=id:node_3458668