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cov-lineages / pango-designation

Repository for suggesting new lineages that should be added to the current scheme
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HK.3.2 sublineage with S:Q677H(87 seq, 6 countries, mainly in Ontario, Canada), then S:S680F(10 seq) #2362

Closed Over-There-Is closed 11 months ago

Over-There-Is commented 11 months ago

Transferred from sars-cov-2-variants/lineage-proposals#955

HK.3.2> A708C(Orf1a:E148A)> G28056A(~Orf8:A55T~)> C10969T, G23593T(S:Q677H) Query: C10969T, G23593T, G28056A(Edited)

>C7793A(Orf1a:Q2510K), T13270C, C23601T(S:S680F) 10 seq

Earliest Sequence: 09-21 Ontario, Canada EPI_ISL_18344279 Latest Sequence: 11-14 Iowa, US EPI_ISL_18519458 Regions Detected: Canada 79(Ontario 77, Alberta 2), US 5(NY 4[3 JFK, 2 from UAE, 1 screening], Iowa 1), Austria 1(Burgenland), China 1(Sichuan), Slovenia 1(Obalnokraska)

https://nextstrain.org/fetch/github.com/Over-There-Is/subtreeAuspice/raw/main/subtreeAuspice_genome_20684_763510.json?c=country&label=id:node_11036898 2023-11-07 (3)

Sequences: EPI_ISL_18344279, EPI_ISL_18344781, EPI_ISL_18371997, EPI_ISL_18372018, EPI_ISL_18395172, EPI_ISL_18395697, EPI_ISL_18395725, EPI_ISL_18395727-18395728, EPI_ISL_18395730-18395732, EPI_ISL_18395736, EPI_ISL_18395738, EPI_ISL_18395762, EPI_ISL_18426511, EPI_ISL_18426629, EPI_ISL_18426706, EPI_ISL_18426964, EPI_ISL_18427012-18427013, EPI_ISL_18427173, EPI_ISL_18427176, EPI_ISL_18427310, EPI_ISL_18427320, EPI_ISL_18427323, EPI_ISL_18427325, EPI_ISL_18427327, EPI_ISL_18427330, EPI_ISL_18427388, EPI_ISL_18427438, EPI_ISL_18427527, EPI_ISL_18433188, EPI_ISL_18440521, EPI_ISL_18440531, EPI_ISL_18448154, EPI_ISL_18448170, EPI_ISL_18448288, EPI_ISL_18448291, EPI_ISL_18448547, EPI_ISL_18448755, EPI_ISL_18448778, EPI_ISL_18448816, EPI_ISL_18451423, EPI_ISL_18451426, EPI_ISL_18451454, EPI_ISL_18451463, EPI_ISL_18456240, EPI_ISL_18456286, EPI_ISL_18471251, EPI_ISL_18471305, EPI_ISL_18471341, EPI_ISL_18471497, EPI_ISL_18471539, EPI_ISL_18471558, EPI_ISL_18471560, EPI_ISL_18471572, EPI_ISL_18471932, EPI_ISL_18471943, EPI_ISL_18471999, EPI_ISL_18472056, EPI_ISL_18474366, EPI_ISL_18493720, EPI_ISL_18504215, EPI_ISL_18504277, EPI_ISL_18504563, EPI_ISL_18504629, EPI_ISL_18504636, EPI_ISL_18504772, EPI_ISL_18504883, EPI_ISL_18504979, EPI_ISL_18505024, EPI_ISL_18505070-18505072, EPI_ISL_18505077, EPI_ISL_18505291, EPI_ISL_18505437-18505440, EPI_ISL_18505447, EPI_ISL_18505459, EPI_ISL_18506044, EPI_ISL_18518326, EPI_ISL_18519458
Over-There-Is commented 11 months ago

Österreich

Over-There-Is commented 11 months ago

China

Over-There-Is commented 11 months ago

HK.3.2.1