HK.3.2 sublineage with S:R214H(117 sequences, 16 countries), most with S:I1221T(87)

[Over-There-Is]

Transferred from sars-cov-2-variants/lineage-proposals#955

HK.3.2> C10039T> C29555T> G22203A(S:R214H)> T25224C(S:I1221T) Query: C853T, G22203A, C29555T(6 dropout) Query: C2334T, G22203A, C29555T (3 dropout) Query for S:I1221T branch: A405G, C853, T25224C(1 dropout) Query for ORF1ab:G2265D branch: G7059A, C10543T

Earliest Sequence: 09-14 Singapore EPI_ISL_18306940 Latest Sequence: 01-12 Kagoshima, Japan EPI_ISL_18870027 Regions Detected: South Korea 29, China 6(Sichuan 2, Shanghai 2[1 from Taiwan], Hong Kong 1, Xinjiang 1), Japan 5(Osaka 1, Okayama 1, Kagoshima 1, Saitama 1, Tokyo 1), Singapore 4(1 from China), Malaysia 2(Sarawak), Thailand 2(Bangkok),Turkey 1(Ankara); New Zealand 29(Auckland 12, Manukau 11, Canterbury 3, Hutt Valley 1, Waikato 1, Waitemata 1), Australia 5(NSW 3, SA 1, WA 1); US 14(Hawaii 6, Florida 2, NY 2, California 1, Maryland 1, Nebraska 1, Washington 1[SEA airport, from Japan]), Canada 8(Quebec); UK 4(Wales 2, England 1, Scotland 1), France 2(IDF 1, Grand Est 1), Austria 1(Wien), Germany 1(Berlin)

https://nextstrain.org/fetch/github.com/Over-There-Is/subtreeAuspice/raw/main/subtreeAuspice_genome_20684_763510.json?c=country&label=id:node_11091714

Sequences:

EPI_ISL_18306940, EPI_ISL_18309458, EPI_ISL_18365612, EPI_ISL_18366380, EPI_ISL_18373566, EPI_ISL_18402554, EPI_ISL_18438950, EPI_ISL_18444964, EPI_ISL_18449268, EPI_ISL_18473002, EPI_ISL_18478209, EPI_ISL_18485459, EPI_ISL_18491839, EPI_ISL_18496078, EPI_ISL_18503972, EPI_ISL_18505579, EPI_ISL_18511015, EPI_ISL_18511352, EPI_ISL_18511402, EPI_ISL_18511453, EPI_ISL_18522309, EPI_ISL_18529063, EPI_ISL_18530202, EPI_ISL_18535023, EPI_ISL_18547793, EPI_ISL_18556655, EPI_ISL_18561619, EPI_ISL_18561621, EPI_ISL_18561628, EPI_ISL_18561660, EPI_ISL_18561743, EPI_ISL_18561758, EPI_ISL_18561802, EPI_ISL_18561910, EPI_ISL_18561922, EPI_ISL_18561999-18562000, EPI_ISL_18562105, EPI_ISL_18562164, EPI_ISL_18562178, EPI_ISL_18562194, EPI_ISL_18562381, EPI_ISL_18562507, EPI_ISL_18562621, EPI_ISL_18564317, EPI_ISL_18566674, EPI_ISL_18566688, EPI_ISL_18578230, EPI_ISL_18578245, EPI_ISL_18586313-18586314, EPI_ISL_18593074, EPI_ISL_18597029, EPI_ISL_18597439, EPI_ISL_18605056, EPI_ISL_18613624, EPI_ISL_18613670, EPI_ISL_18620912, EPI_ISL_18632616, EPI_ISL_18633569, EPI_ISL_18633996, EPI_ISL_18643178, EPI_ISL_18651082, EPI_ISL_18651871, EPI_ISL_18651923, EPI_ISL_18654332, EPI_ISL_18654353, EPI_ISL_18661661, EPI_ISL_18670801, EPI_ISL_18670897, EPI_ISL_18670919, EPI_ISL_18671233, EPI_ISL_18671273, EPI_ISL_18671308, EPI_ISL_18671390, EPI_ISL_18671542, EPI_ISL_18671573, EPI_ISL_18671621, EPI_ISL_18671647, EPI_ISL_18672145, EPI_ISL_18673083, EPI_ISL_18686768, EPI_ISL_18687310, EPI_ISL_18688829, EPI_ISL_18720502, EPI_ISL_18728768, EPI_ISL_18732946, EPI_ISL_18732961, EPI_ISL_18733483, EPI_ISL_18739241, EPI_ISL_18752019-18752020, EPI_ISL_18752023-18752025, EPI_ISL_18752028-18752031, EPI_ISL_18774844, EPI_ISL_18777898, EPI_ISL_18777983, EPI_ISL_18777985, EPI_ISL_18791691-18791693, EPI_ISL_18791868, EPI_ISL_18792071, EPI_ISL_18792161, EPI_ISL_18823640, EPI_ISL_18847191, EPI_ISL_18858720, EPI_ISL_18870027

[Over-There-Is]

Tokyo S:R214H without S:I1221T

[FedeGueli]

Tokyo S:R214H without S:I1221T

is it basal to the tree?

[Over-There-Is]

Tokyo S:R214H without S:I1221T

is it basal to the tree?

Probably

[Over-There-Is]

Thailand+1, without I1221T

[Over-There-Is]

NZ+17 CN+1

[Over-There-Is]

Wales +2

[Over-There-Is]

Quebec+2

[Over-There-Is]

KR+2

[Over-There-Is]

Singapore/R91MR120/2023|EPI_ISL_18651082|2023-12-07 K356T from China

[Over-There-Is]

Sarawak+2 Berlin+1

[FedeGueli]

This seems quite widespread in eastern asai i think it should be designated cc @corneliusroemer

[DailyCovidCases]

@Over-There-Is Please close this issue