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Repository for suggesting new lineages that should be added to the current scheme
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HK.3.2 sublineage with S:A352S(40 sequences, 8 countries, mainly in Scandinavia) #2421

Open Over-There-Is opened 10 months ago

Over-There-Is commented 10 months ago

Transferred from sars-cov-2-variants/lineage-proposals#955

HK.3.2> C22591T> G1186T, C3425T(Orf1a:P1054S)> C27513T> G22616T(S:A352S), T25159C Query: C21602A, T25159C, C27513T

Earliest Sequence: 09-25 Straßburg, Grand Est, France EPI_ISL_18376149 Latest Sequence: 01-03 Finland EPI_ISL_18832792 Regions Detected: Finland 20, Sweden 6(Norrbotten 2, Västernorrland 2, Uppsala 1, Västerbotten 1), Germany 4(Berlin 2, Sachsen-Anhalt 2), UK 4(England 3, Wales 1), France 1(Grand Est), Greece 1(Attica); Singapore 3, Malaysia 1(Johor)

https://nextstrain.org/fetch/github.com/Over-There-Is/subtreeAuspice/raw/main/subtreeAuspice_genome_20684_763510.json?label=id:node_3551104 2023-12-22 (2)

Sequences: EPI_ISL_18376149, EPI_ISL_18407103, EPI_ISL_18445032, EPI_ISL_18451674, EPI_ISL_18473586, EPI_ISL_18500597, EPI_ISL_18521511, EPI_ISL_18521514, EPI_ISL_18541276, EPI_ISL_18541286, EPI_ISL_18541323, EPI_ISL_18541417, EPI_ISL_18541429, EPI_ISL_18541441, EPI_ISL_18541448, EPI_ISL_18552774, EPI_ISL_18585478, EPI_ISL_18587042, EPI_ISL_18589925, EPI_ISL_18614140, EPI_ISL_18624769, EPI_ISL_18634939, EPI_ISL_18634988, EPI_ISL_18635131, EPI_ISL_18635137, EPI_ISL_18635260, EPI_ISL_18635385, EPI_ISL_18661559, EPI_ISL_18661562, EPI_ISL_18661898, EPI_ISL_18668044, EPI_ISL_18698136, EPI_ISL_18713094, EPI_ISL_18713107, EPI_ISL_18713209, EPI_ISL_18713283, EPI_ISL_18713300, EPI_ISL_18713303, EPI_ISL_18766943, EPI_ISL_18832792
DailyCovidCases commented 1 week ago

@Over-There-Is Please close this issue