HK.3.2 sublineage with S:L216F, S:E554K(42 sequences, 12 countries)

[Over-There-Is]

Transferred from sars-cov-2-variants/lineage-proposals#955

HK.3.2> C100T> C22208T(S:L216F), G23222A(S:E554K), A26441G(E:N66S) Query: C22208T, A26441G

S:L216F and S:E554K are convergent with BA.2.86.

Earliest Sequence: 09-17 Ningde, Fujian, China EPI_ISL_18401711 Latest Sequence: 01-01 Burgenland, Austria EPI_ISL_18744746 Regions Detected: China 16(Heilongjiang 11, Shanghai 3, Fujian 1, Hubei 1), Japan 3(Kanagawa 1, Tokyo 1, Nagano 1), Malaysia 3(Sarawak 2, Johor 1), Singapore 1(from Saudi Arabia), South Korea 1; Slovakia 7(Banská Bystrica 6, Prešov 1), Austria 3(Wien 2, Burgenland 1), Germany 3(Bayern), Sweden 3(Södermanland 2, Örebro 1); Canada 1(Ontario), US 1 (California)

https://nextstrain.org/fetch/github.com/Over-There-Is/subtreeAuspice/raw/main/subtreeAuspice_genome_20684_763510.json?abel=id:node_3507506

Sequences:

EPI_ISL_18401711, EPI_ISL_18443959, EPI_ISL_18500119 EPI_ISL_18508529, EPI_ISL_18520766, EPI_ISL_18526195, EPI_ISL_18575611, EPI_ISL_18598256-18598257, EPI_ISL_18615804, EPI_ISL_18615836, EPI_ISL_18615842, EPI_ISL_18615861, EPI_ISL_18632894, EPI_ISL_18638379, EPI_ISL_18639709, EPI_ISL_18701033, EPI_ISL_18716393, EPI_ISL_18722165, EPI_ISL_18723913, EPI_ISL_18723927, EPI_ISL_18723933, EPI_ISL_18724542, EPI_ISL_18744746, EPI_ISL_18744907, EPI_ISL_18769906-18769908, EPI_ISL_18777196, EPI_ISL_18777200, EPI_ISL_18777261, EPI_ISL_18780132, EPI_ISL_18781596, EPI_ISL_18811814, EPI_ISL_18821334, EPI_ISL_18836788, EPI_ISL_18857558, EPI_ISL_18857566, EPI_ISL_18857579-18857581, EPI_ISL_18857586

[FedeGueli]

28

[FedeGueli]

36

[aviczhl2]

42 seqs now

[DailyCovidCases]

Please close this issue