cov-lineages / pango-designation

Repository for suggesting new lineages that should be added to the current scheme
Other
1.04k stars 97 forks source link

KB.2 with ORF3a:T175I and S:A475V (48 seqs, mainly in South Korea, 4 countries) #2456

Closed NkRMnZr closed 3 months ago

NkRMnZr commented 8 months ago

Taken from Branch 3 of Multitask sars-cov-2-variants/lineage-proposals#978

Defining Mutations: KB.2 (EG.5.1.8.2) > C25916T(ORF3a:T175I) > T10795A, C22986T(S:A475V) Query: C12100G, C14676A, C22986T Earliest seq: 2023-09-29 (EPI_ISL_18488866, South Korea) Latest seq: 2023-12-25 (EPI_ISL_18705835, South Australia, Australia) Sampled Countries: South Korea (36), Australia (6: NSW/5; SA), Japan (4), USA (2: AZ; IL)

Genomes: `EPI_ISL_18430654, EPI_ISL_18439024, EPI_ISL_18488866, EPI_ISL_18503877, EPI_ISL_18503932, EPI_ISL_18513973, EPI_ISL_18539777, EPI_ISL_18566615, EPI_ISL_18577217, EPI_ISL_18597062, EPI_ISL_18597066, EPI_ISL_18597121, EPI_ISL_18597285, EPI_ISL_18597370, EPI_ISL_18633505, EPI_ISL_18639272, EPI_ISL_18639338, EPI_ISL_18639341-18639342, EPI_ISL_18683380, EPI_ISL_18686668, EPI_ISL_18686673, EPI_ISL_18686675, EPI_ISL_18686687, EPI_ISL_18686694, EPI_ISL_18686702, EPI_ISL_18686706-18686708, EPI_ISL_18686712, EPI_ISL_18686736, EPI_ISL_18686739, EPI_ISL_18686754, EPI_ISL_18705835, EPI_ISL_18709158, EPI_ISL_18712264, EPI_ISL_18712277, EPI_ISL_18712287, EPI_ISL_18712294, EPI_ISL_18712303, EPI_ISL_18712315, EPI_ISL_18725256, EPI_ISL_18725258, EPI_ISL_18732906, EPI_ISL_18740673, EPI_ISL_18740700, EPI_ISL_18751891, EPI_ISL_18751911`

UShER: https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_1a7e2_3af540.json?f_userOrOld=uploaded%20sample&label=id:node_3446691 image