cov-lineages / pango-designation

Repository for suggesting new lineages that should be added to the current scheme
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JN.1.4 + S:N185D ( 293 sequences, 8 countries) #2462

Closed FedeGueli closed 8 months ago

FedeGueli commented 8 months ago

Transferred from: https://github.com/sars-cov-2-variants/lineage-proposals/issues/1180

Defining mutations: JN.1.4 [Orf1a:T170I (C774T)] > T18453C > S:N185D (A22115G)

Query:C774T,T18453C,A22115G Tree:

Screenshot 2024-01-17 alle 13 10 04

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice1_genome_test_9e38_7c3610.json?label=id:node_6862179 Countries:

Screenshot 2024-01-17 alle 13 10 35

Samples: 118 First sample collected on 2023-11-17 EPI_ISL_18601499 NY IDs:

Here EPI_ISL_18601499, EPI_ISL_18621722, EPI_ISL_18621757, EPI_ISL_18621810, EPI_ISL_18621904, EPI_ISL_18621928, EPI_ISL_18636446, EPI_ISL_18636476, EPI_ISL_18636501, EPI_ISL_18644755, EPI_ISL_18644779, EPI_ISL_18691048, EPI_ISL_18691137, EPI_ISL_18691301, EPI_ISL_18691545, EPI_ISL_18691870, EPI_ISL_18691903, EPI_ISL_18691931, EPI_ISL_18692251, EPI_ISL_18692305, EPI_ISL_18695464, EPI_ISL_18695471, EPI_ISL_18704446, EPI_ISL_18704455, EPI_ISL_18713067, EPI_ISL_18714063, EPI_ISL_18721012, EPI_ISL_18724910, EPI_ISL_18728290, EPI_ISL_18728325, EPI_ISL_18728449, EPI_ISL_18728496, EPI_ISL_18728527, EPI_ISL_18728652, EPI_ISL_18728657, EPI_ISL_18728668, EPI_ISL_18728670, EPI_ISL_18728694, EPI_ISL_18728759, EPI_ISL_18728972, EPI_ISL_18729007, EPI_ISL_18729017, EPI_ISL_18729037, EPI_ISL_18729054, EPI_ISL_18729134, EPI_ISL_18729192, EPI_ISL_18729205, EPI_ISL_18729208, EPI_ISL_18729217, EPI_ISL_18729239, EPI_ISL_18729302, EPI_ISL_18730675, EPI_ISL_18730696-18730697, EPI_ISL_18730700, EPI_ISL_18730704, EPI_ISL_18730707, EPI_ISL_18730730, EPI_ISL_18730733, EPI_ISL_18730737, EPI_ISL_18741991, EPI_ISL_18751814, EPI_ISL_18756465, EPI_ISL_18756723, EPI_ISL_18756898, EPI_ISL_18756989, EPI_ISL_18757115, EPI_ISL_18757125, EPI_ISL_18757139, EPI_ISL_18757166, EPI_ISL_18757171, EPI_ISL_18757222, EPI_ISL_18757358, EPI_ISL_18757369, EPI_ISL_18757389, EPI_ISL_18757394, EPI_ISL_18757553, EPI_ISL_18769099, EPI_ISL_18772763, EPI_ISL_18772813, EPI_ISL_18772843, EPI_ISL_18773880, EPI_ISL_18778005, EPI_ISL_18779060, EPI_ISL_18779063, EPI_ISL_18779074, EPI_ISL_18779080, EPI_ISL_18779291, EPI_ISL_18779337, EPI_ISL_18779563, EPI_ISL_18779844, EPI_ISL_18779864, EPI_ISL_18779875, EPI_ISL_18779934, EPI_ISL_18779968, EPI_ISL_18780053, EPI_ISL_18780075, EPI_ISL_18780298, EPI_ISL_18780341, EPI_ISL_18780385, EPI_ISL_18780436, EPI_ISL_18780516, EPI_ISL_18780646, EPI_ISL_18780660, EPI_ISL_18780664, EPI_ISL_18780766, EPI_ISL_18780793, EPI_ISL_18780854, EPI_ISL_18780866-18780867, EPI_ISL_18780935, EPI_ISL_18780969, EPI_ISL_18780991, EPI_ISL_18781042, EPI_ISL_18781047, EPI_ISL_18781072, EPI_ISL_18781131, EPI_ISL_18781162
FedeGueli commented 8 months ago

169 expanding to South Korea and Canada

FedeGueli commented 8 months ago

251 now widespread in different countries and 4 continents , @corneliusroemer i suggest to designate it.

FedeGueli commented 8 months ago

293 new country new continent.

Mydtlwn commented 8 months ago

@corneliusroemer