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cov-lineages / pango-designation

Repository for suggesting new lineages that should be added to the current scheme
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GJ.1.2/HV.1 recombinant(50 seqs, 6 countries) #2463

Closed aviczhl2 closed 5 months ago

aviczhl2 commented 6 months ago

From https://github.com/sars-cov-2-variants/lineage-proposals/issues/920

HV.1+ C1601T, T2334C(rev), C4234T, A5720G(rev),T5835C(rev),G6536A, C7819G, C14509G, G21255C, C26013T

Orf1a: L446F, V690A(rev),S1819G(rev), G2019S Orf1b: Q348E

T2334C(rev), C4234T, A5720G(rev),T5835C(rev), G6536A, C7819G from GJ.1.2 C1601T from a GJ.1.2 branch

2 of C14509G,G21255C,C26013T are private , the 3rd one is from an HV.1 branch.

GJ.1.2--HV.1 Breakpoint between 7820 and 9692.

GISAID query: C14509G,C26013T No. of seqs: 50(Brazil 1 Canada 30 Denmark 2 UK 6 Spain 2 USA 8 Unknown 1) 49 on GISAID, one OY not on GISAID.

First: EPI_ISL_18315362, UK, 2023-9-16 Latest: EPI_ISL_18695929, Canada, 2023-12-14

usher

image

aviczhl2 commented 5 months ago

No new seqs

FedeGueli commented 5 months ago

Thx