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cov-lineages / pango-designation

Repository for suggesting new lineages that should be added to the current scheme
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JN.1 with S:A1087S > S:R346T > S:F59S [17 with 346, US east coast + 1 Canada] #2464

Closed corneliusroemer closed 5 months ago

corneliusroemer commented 6 months ago

GISAID query: C26894T,C25680T,G24821T

Could be that 346T becomes increasingly beneficial as immunity to JN.1 without 346T develops. The first 346T lineages e.g. in France didn't seem to have growth advantage. Maybe that's changing now.

JN.1 with S:A1087S > S:R346T > S:F59S [17 with 346, US east coast + 1 Canada]

image

Tricky thing here is that it's not clear how to break into sublineages, if at all. I'd prefer to wait a few more days to see where it makes sense to delineate.

image

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice1_genome_test_29456_810590.json

ujoshi4 commented 6 months ago

This seems to be the best S:R346T branch with that S2 mutation that might be evasive.

FedeGueli commented 5 months ago

Designated JN.1.13 starting with S:A1078S via https://github.com/cov-lineages/pango-designation/commit/d68c064298df328a9bad3db6218c587956f895ef