cov-lineages / pango-designation

Repository for suggesting new lineages that should be added to the current scheme
Other
1.03k stars 97 forks source link

XBB.1.16.6 with S:K304N (151 seqs, 12 countries) #2469

Closed NkRMnZr closed 1 month ago

NkRMnZr commented 6 months ago

Transferred from sars-cov-2-variants/lineage-proposals#1276

Defining Mutations: XBB.1.16.6 > C8947T > A10861G > T23986C(S:D808D) > A22474T(S:K304N) Query: C8947T, A10861G, A22474T Earliest seq: 2023-08-22 (EPI_ISL_18222140, SFO airport, travel history: UK) Latest seq: 2023-12-25 (EPI_ISL_18717875, England, UK) Sampled Countries: USA (78: NM/11; NY/9; OH/8; CO/7; CA/6; NJ/4; TX/4; IL/3; MS/3; NE/3; PA/3; VA/3; HI/2; MT/2; UT/2; AZ; FL; IA; IN; MD; WV; ex. UK/2), Canada (28: ON/18; BC/9; NS/1), UK (16: EN), Austria (6), Slovenia (6), Netherlands (5), Germany (4), Poland (4), France (1), Norway (1), Slovakia (1), Sweden (1)

Genomes: `EPI_ISL_18222075, EPI_ISL_18222140, EPI_ISL_18344537, EPI_ISL_18351755, EPI_ISL_18358838, EPI_ISL_18378367, EPI_ISL_18402154, EPI_ISL_18403650, EPI_ISL_18412557, EPI_ISL_18412576, EPI_ISL_18412606, EPI_ISL_18421132, EPI_ISL_18421136, EPI_ISL_18433143, EPI_ISL_18439904, EPI_ISL_18444567, EPI_ISL_18455068, EPI_ISL_18456413, EPI_ISL_18463545, EPI_ISL_18466983, EPI_ISL_18467449, EPI_ISL_18470127, EPI_ISL_18497215, EPI_ISL_18498239, EPI_ISL_18507017, EPI_ISL_18507088, EPI_ISL_18507214, EPI_ISL_18510154, EPI_ISL_18510156, EPI_ISL_18512491, EPI_ISL_18519539, EPI_ISL_18521284, EPI_ISL_18523837, EPI_ISL_18533156, EPI_ISL_18533483, EPI_ISL_18533921, EPI_ISL_18536389, EPI_ISL_18536436, EPI_ISL_18540662, EPI_ISL_18541741, EPI_ISL_18549730, EPI_ISL_18549761, EPI_ISL_18550155, EPI_ISL_18550443, EPI_ISL_18555117, EPI_ISL_18573011-18573012, EPI_ISL_18575506, EPI_ISL_18575685, EPI_ISL_18581989, EPI_ISL_18583162, EPI_ISL_18584072, EPI_ISL_18594791, EPI_ISL_18594799, EPI_ISL_18595192, EPI_ISL_18595196, EPI_ISL_18600707, EPI_ISL_18602314, EPI_ISL_18603492, EPI_ISL_18603880, EPI_ISL_18606375-18606376, EPI_ISL_18610958, EPI_ISL_18612910, EPI_ISL_18618068, EPI_ISL_18620651, EPI_ISL_18620674, EPI_ISL_18620805, EPI_ISL_18621712, EPI_ISL_18621738, EPI_ISL_18633039, EPI_ISL_18638397, EPI_ISL_18643158, EPI_ISL_18644506, EPI_ISL_18644535, EPI_ISL_18644924, EPI_ISL_18645045, EPI_ISL_18645050, EPI_ISL_18645086, EPI_ISL_18645090, EPI_ISL_18645268, EPI_ISL_18645270, EPI_ISL_18645332, EPI_ISL_18645512, EPI_ISL_18645517, EPI_ISL_18645684, EPI_ISL_18645780, EPI_ISL_18645798, EPI_ISL_18648200-18648202, EPI_ISL_18657380, EPI_ISL_18658714, EPI_ISL_18658779, EPI_ISL_18671697-18671698, EPI_ISL_18679529, EPI_ISL_18690540, EPI_ISL_18691293, EPI_ISL_18691614, EPI_ISL_18693002, EPI_ISL_18694025-18694026, EPI_ISL_18699504, EPI_ISL_18702081, EPI_ISL_18702558, EPI_ISL_18702566, EPI_ISL_18702664, EPI_ISL_18702670, EPI_ISL_18702674, EPI_ISL_18702753, EPI_ISL_18705165, EPI_ISL_18705506, EPI_ISL_18708239, EPI_ISL_18708895, EPI_ISL_18709780, EPI_ISL_18712725, EPI_ISL_18712743, EPI_ISL_18712748, EPI_ISL_18714427, EPI_ISL_18714739-18714740, EPI_ISL_18714742, EPI_ISL_18714744, EPI_ISL_18714748, EPI_ISL_18714752-18714753, EPI_ISL_18714768, EPI_ISL_18717875, EPI_ISL_18717898, EPI_ISL_18721187, EPI_ISL_18723923, EPI_ISL_18724873, EPI_ISL_18731802, EPI_ISL_18738496, EPI_ISL_18744018, EPI_ISL_18748220, EPI_ISL_18750314, EPI_ISL_18756332, EPI_ISL_18756935, EPI_ISL_18757999, EPI_ISL_18769429, EPI_ISL_18773749, EPI_ISL_18774988, EPI_ISL_18779015, EPI_ISL_18779208, EPI_ISL_18779734, EPI_ISL_18781002, EPI_ISL_18784913, EPI_ISL_18796294, EPI_ISL_18797644`

UShER: https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_23f57_c98390.json?label=id:node_3268947 166304