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cov-lineages / pango-designation

Repository for suggesting new lineages that should be added to the current scheme
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HV.1* with S:T573I (60 seqs at 02-06) #2473

Closed krosa1910 closed 4 months ago

krosa1910 commented 6 months ago

Mutations Added: T1834A, C3924T, C12295A, T26837G,C10279T, C15240T, G18826A, C23280T Infered order of gaining: C10279T->G18826A(Orf1ab: V6188I),T26837G->T1834A,C15240T->C3924T(orf1ab:P1220L),C12295A,C23280T(S:T573I) Gisaid Search: C3924T,T26837G Earliest Sequence: EPI_ISL_18592750 New York, US 2023-11-15 Latest Sequence: EPI_ISL_18808316 New York, US 2023-01-02 Geographic Distribution: 21 Canada (all Ontario), 1 Peurto Rico, 31 US(1 CO,2 HI, 1 MN, 1 MD, 25 NY, 1 VA) usher: https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/singleSubtreeAuspice_genome_29589_1c1670.json?f_userOrOld=uploaded%20sample

Screenshot 2024-01-25 at 10 39 53 AM

C3924T is in the relatively fast JC.5.1 series and C23280T is quite known for its presence among GK.1.1. This issue is transformed from issue 957 (HV.1* S mutation watch) from the other repository, while this branch was initially discovered by me, Fede find its potential of growing and remind me to propose it.

krosa1910 commented 5 months ago

No update for a while, I think I would close it if that remains through this Friday.

krosa1910 commented 4 months ago

No big changes, close it now.