JD.1.1.1/JN.1.1 recombinant(53 seqs, 4 countries, 11% Brazil)

cov-lineages / pango-designation

Repository for suggesting new lineages that should be added to the current scheme

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Closed aviczhl2 closed 5 months ago

aviczhl2 commented 6 months ago

JD.1.1.1--JN.1.1

Breakpoint between 11043 and 11726

Additional mutations: C2668T

C2668T from a JD.1.1.1 branch. There are other XBB.1.5.102* seqs with C2668T, however they have other mutations, so excluded.

Some seqs do not have C2668T, however they're missing coverage on that place, no seq have 2668C.

GISAID query: A405G, C6896T, C11747T,C28958A No. of seqs: 22(Denmark 1 Spain 3 Canada 1 Brazil 17)

First, EPI_ISL_18572639, Brazil, 2023-11-8 Latest: EPI_ISL_18803970, Canada, 2024-1-11

FedeGueli commented 6 months ago

It appears very fast maybe founder effect maybe something else.

FedeGueli commented 6 months ago

ping @corneliusroemer i suggest fast designation of this one.

FedeGueli commented 6 months ago

41 now! ping @corneliusroemer

FedeGueli commented 6 months ago

over 7% of brazilian sampels after December 16. Note : Multiple states

aviczhl2 commented 6 months ago

Yeah +19 Brazil crazy.

aviczhl2 commented 5 months ago

15/137=11% in 2024-1 Brazil samples.

FedeGueli commented 5 months ago

ping @corneliusroemer this should be designated!

Mike-Honey commented 5 months ago

I think this was designated as XDR?

aviczhl2 commented 5 months ago

I think this was designated as XDR?

Yeah